Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1155 and GFF1156 overlap by 4 nucleotides GFF1156 and GFF1157 are separated by 30 nucleotides GFF1157 and GFF1158 are separated by 27 nucleotides GFF1158 and GFF1159 overlap by 47 nucleotides
GFF1155 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 11,111 to 13,276
GFF1155
GFF1156 - 2-hydroxychromene-2-carboxylate isomerase, at 13,273 to 13,881
GFF1156
GFF1157 - Tricarboxylate transport protein TctC, at 13,912 to 14,916
GFF1157
GFF1158 - Transcriptional regulator, IclR family, at 14,944 to 15,906
GFF1158
GFF1159 - hypothetical protein, at 15,860 to 15,997
GFF1159
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 13.324 kb on + strand at 13.324 kb on + strand at 13.325 kb on - strand at 14.272 kb on + strand, within GFF1157 at 14.273 kb on - strand, within GFF1157 at 14.404 kb on + strand, within GFF1157 at 14.405 kb on - strand, within GFF1157 at 14.405 kb on - strand, within GFF1157 at 14.497 kb on + strand, within GFF1157 at 14.498 kb on - strand, within GFF1157 at 14.498 kb on - strand, within GFF1157 at 14.545 kb on + strand, within GFF1157 at 15.167 kb on + strand, within GFF1158 at 15.167 kb on + strand, within GFF1158 at 15.168 kb on - strand, within GFF1158 at 15.168 kb on - strand, within GFF1158 at 15.168 kb on - strand, within GFF1158 at 15.290 kb on + strand, within GFF1158 at 15.290 kb on + strand, within GFF1158 at 15.291 kb on - strand, within GFF1158 at 15.291 kb on - strand, within GFF1158 at 15.291 kb on - strand, within GFF1158 at 15.389 kb on + strand, within GFF1158 at 15.392 kb on + strand, within GFF1158 at 15.392 kb on + strand, within GFF1158 at 15.392 kb on + strand, within GFF1158 at 15.392 kb on + strand, within GFF1158 at 15.393 kb on - strand, within GFF1158 at 15.393 kb on - strand, within GFF1158 at 15.393 kb on - strand, within GFF1158 at 15.503 kb on + strand, within GFF1158 at 15.504 kb on - strand, within GFF1158 at 15.504 kb on - strand, within GFF1158 at 15.599 kb on + strand, within GFF1158 at 15.599 kb on + strand, within GFF1158 at 15.599 kb on + strand, within GFF1158 at 15.599 kb on + strand, within GFF1158 at 15.600 kb on - strand, within GFF1158 at 15.600 kb on - strand, within GFF1158 at 15.862 kb on - strand at 15.862 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 13,324 + +0.7 13,324 + -0.4 13,325 - +0.4 14,272 + GFF1157 0.36 +0.1 14,273 - GFF1157 0.36 -0.2 14,404 + GFF1157 0.49 -0.5 14,405 - GFF1157 0.49 -0.2 14,405 - GFF1157 0.49 -0.1 14,497 + GFF1157 0.58 +1.0 14,498 - GFF1157 0.58 +0.1 14,498 - GFF1157 0.58 -0.3 14,545 + GFF1157 0.63 +0.9 15,167 + GFF1158 0.23 -0.9 15,167 + GFF1158 0.23 -0.8 15,168 - GFF1158 0.23 -2.1 15,168 - GFF1158 0.23 +0.3 15,168 - GFF1158 0.23 -0.6 15,290 + GFF1158 0.36 -1.5 15,290 + GFF1158 0.36 -0.5 15,291 - GFF1158 0.36 -1.0 15,291 - GFF1158 0.36 -0.3 15,291 - GFF1158 0.36 -0.2 15,389 + GFF1158 0.46 +0.0 15,392 + GFF1158 0.47 -1.0 15,392 + GFF1158 0.47 -0.4 15,392 + GFF1158 0.47 -0.0 15,392 + GFF1158 0.47 -0.1 15,393 - GFF1158 0.47 -0.4 15,393 - GFF1158 0.47 -0.4 15,393 - GFF1158 0.47 -0.9 15,503 + GFF1158 0.58 -0.9 15,504 - GFF1158 0.58 -1.9 15,504 - GFF1158 0.58 -1.3 15,599 + GFF1158 0.68 +0.2 15,599 + GFF1158 0.68 -0.7 15,599 + GFF1158 0.68 -0.9 15,599 + GFF1158 0.68 +0.3 15,600 - GFF1158 0.68 +0.2 15,600 - GFF1158 0.68 -0.0 15,862 - -0.5 15,862 - -0.4
Or see this region's nucleotide sequence