Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1116 and GFF1117 are separated by 268 nucleotides
GFF1116 - hypothetical protein, at 47,305 to 47,589
GFF1116
GFF1117 - FIG00758563: hypothetical protein, at 47,858 to 48,619
GFF1117
Position (kb) 47
48 Strain fitness (log2 ratio) -1
0
1 at 46.324 kb on - strand at 46.341 kb on - strand at 46.374 kb on + strand at 46.374 kb on + strand at 46.375 kb on - strand at 46.397 kb on + strand at 46.397 kb on + strand at 46.415 kb on + strand at 46.498 kb on - strand at 46.651 kb on + strand at 46.652 kb on - strand at 46.652 kb on - strand at 46.718 kb on + strand at 46.719 kb on - strand at 46.739 kb on + strand at 46.931 kb on + strand at 46.932 kb on - strand at 46.932 kb on - strand at 46.970 kb on + strand at 47.004 kb on + strand at 47.004 kb on + strand at 47.068 kb on - strand at 47.156 kb on + strand at 47.156 kb on + strand at 47.156 kb on + strand at 47.307 kb on - strand at 47.468 kb on + strand, within GFF1116 at 47.468 kb on + strand, within GFF1116 at 47.642 kb on + strand at 47.662 kb on + strand at 47.662 kb on + strand at 47.662 kb on + strand at 47.663 kb on - strand at 47.663 kb on - strand at 47.699 kb on + strand at 47.700 kb on - strand at 47.700 kb on - strand at 47.780 kb on + strand at 47.835 kb on - strand at 47.851 kb on + strand at 47.878 kb on - strand at 47.997 kb on + strand, within GFF1117 at 47.998 kb on - strand, within GFF1117 at 47.998 kb on - strand, within GFF1117 at 47.998 kb on - strand, within GFF1117 at 48.037 kb on + strand, within GFF1117 at 48.117 kb on + strand, within GFF1117 at 48.117 kb on + strand, within GFF1117 at 48.118 kb on - strand, within GFF1117 at 48.120 kb on - strand, within GFF1117 at 48.121 kb on + strand, within GFF1117 at 48.122 kb on - strand, within GFF1117 at 48.123 kb on + strand, within GFF1117 at 48.123 kb on + strand, within GFF1117 at 48.124 kb on - strand, within GFF1117 at 48.124 kb on - strand, within GFF1117 at 48.124 kb on - strand, within GFF1117 at 48.129 kb on + strand, within GFF1117 at 48.129 kb on + strand, within GFF1117 at 48.159 kb on + strand, within GFF1117 at 48.160 kb on - strand, within GFF1117 at 48.268 kb on + strand, within GFF1117 at 48.314 kb on - strand, within GFF1117
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 46,324 - -0.3 46,341 - +1.0 46,374 + -0.1 46,374 + -0.0 46,375 - +0.4 46,397 + -0.4 46,397 + -0.3 46,415 + +1.0 46,498 - -0.1 46,651 + -0.9 46,652 - -0.0 46,652 - +0.6 46,718 + -0.0 46,719 - +0.3 46,739 + +0.2 46,931 + -0.5 46,932 - +0.3 46,932 - +0.3 46,970 + +0.9 47,004 + +0.5 47,004 + +0.1 47,068 - -0.4 47,156 + -0.8 47,156 + +1.0 47,156 + +0.2 47,307 - -0.3 47,468 + GFF1116 0.57 +1.2 47,468 + GFF1116 0.57 -0.1 47,642 + -0.0 47,662 + -0.5 47,662 + +0.4 47,662 + +0.4 47,663 - +1.6 47,663 - -1.6 47,699 + -0.1 47,700 - -0.1 47,700 - +0.2 47,780 + -1.0 47,835 - +0.1 47,851 + +0.3 47,878 - -0.4 47,997 + GFF1117 0.18 +0.4 47,998 - GFF1117 0.18 +0.0 47,998 - GFF1117 0.18 -0.5 47,998 - GFF1117 0.18 -1.1 48,037 + GFF1117 0.23 +0.6 48,117 + GFF1117 0.34 -0.4 48,117 + GFF1117 0.34 +1.3 48,118 - GFF1117 0.34 -0.1 48,120 - GFF1117 0.34 -0.4 48,121 + GFF1117 0.35 +0.0 48,122 - GFF1117 0.35 +0.1 48,123 + GFF1117 0.35 -0.1 48,123 + GFF1117 0.35 -1.2 48,124 - GFF1117 0.35 -0.1 48,124 - GFF1117 0.35 -1.0 48,124 - GFF1117 0.35 +0.1 48,129 + GFF1117 0.36 -0.2 48,129 + GFF1117 0.36 +0.7 48,159 + GFF1117 0.40 +0.5 48,160 - GFF1117 0.40 -0.2 48,268 + GFF1117 0.54 +1.2 48,314 - GFF1117 0.60 +0.5
Or see this region's nucleotide sequence