Experiment: Ying_sugar7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1041 and GFF1042 are separated by 589 nucleotides GFF1042 and GFF1043 overlap by 4 nucleotides GFF1043 and GFF1044 overlap by 4 nucleotides
GFF1041 - Aerotaxis sensor receptor protein, at 779,428 to 780,972
GFF1041
GFF1042 - hypothetical cytochrome oxidase associated membrane protein, at 781,562 to 782,179
GFF1042
GFF1043 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 782,176 to 782,859
GFF1043
GFF1044 - Copper-containing nitrite reductase (EC 1.7.2.1), at 782,856 to 783,473
GFF1044
Position (kb) 781
782
783 Strain fitness (log2 ratio) -1
0
1
2 at 781.036 kb on + strand at 781.136 kb on + strand at 781.146 kb on - strand at 781.314 kb on - strand at 781.328 kb on - strand at 781.563 kb on + strand at 781.765 kb on + strand, within GFF1042 at 781.765 kb on + strand, within GFF1042 at 781.765 kb on + strand, within GFF1042 at 781.765 kb on + strand, within GFF1042 at 781.766 kb on - strand, within GFF1042 at 781.766 kb on - strand, within GFF1042 at 781.766 kb on - strand, within GFF1042 at 782.065 kb on + strand, within GFF1042 at 782.066 kb on - strand, within GFF1042 at 782.066 kb on - strand, within GFF1042 at 782.265 kb on - strand, within GFF1043 at 782.624 kb on + strand, within GFF1043 at 783.052 kb on + strand, within GFF1044 at 783.052 kb on + strand, within GFF1044 at 783.052 kb on + strand, within GFF1044 at 783.097 kb on - strand, within GFF1044 at 783.097 kb on - strand, within GFF1044
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 2 remove 781,036 + +0.4 781,136 + -0.7 781,146 - +1.2 781,314 - +0.0 781,328 - -0.7 781,563 + -0.3 781,765 + GFF1042 0.33 +0.3 781,765 + GFF1042 0.33 -0.2 781,765 + GFF1042 0.33 +2.0 781,765 + GFF1042 0.33 +0.1 781,766 - GFF1042 0.33 +0.6 781,766 - GFF1042 0.33 +0.2 781,766 - GFF1042 0.33 +0.2 782,065 + GFF1042 0.81 -0.3 782,066 - GFF1042 0.82 -0.0 782,066 - GFF1042 0.82 +0.2 782,265 - GFF1043 0.13 +1.1 782,624 + GFF1043 0.65 +0.3 783,052 + GFF1044 0.32 -1.2 783,052 + GFF1044 0.32 -0.4 783,052 + GFF1044 0.32 -0.7 783,097 - GFF1044 0.39 -0.0 783,097 - GFF1044 0.39 +0.4
Or see this region's nucleotide sequence