Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03192

Experiment: TSB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_03191 and MPMX26_03192 are separated by 13 nucleotidesMPMX26_03192 and MPMX26_03193 are separated by 22 nucleotidesMPMX26_03193 and MPMX26_03194 are separated by 45 nucleotidesMPMX26_03194 and MPMX26_03195 are separated by 17 nucleotides MPMX26_03191: MPMX26_03191 - Type IV secretion system protein virB4, at 43,776 to 46,487 _03191 MPMX26_03192: MPMX26_03192 - hypothetical protein, at 46,501 to 46,794 _03192 MPMX26_03193: MPMX26_03193 - Membrane-bound lytic murein transglycosylase F, at 46,817 to 47,530 _03193 MPMX26_03194: MPMX26_03194 - hypothetical protein, at 47,576 to 47,776 _03194 MPMX26_03195: MPMX26_03195 - Coupling protein TraD, at 47,794 to 49,314 _03195 Position (kb) 46 47Strain fitness (log2 ratio) -2 -1 0 1 2at 45.528 kb on - strand, within MPMX26_03191at 45.542 kb on - strand, within MPMX26_03191at 45.554 kb on - strand, within MPMX26_03191at 45.554 kb on - strand, within MPMX26_03191at 45.554 kb on - strand, within MPMX26_03191at 45.554 kb on - strand, within MPMX26_03191at 45.554 kb on - strand, within MPMX26_03191at 45.554 kb on - strand, within MPMX26_03191at 45.560 kb on - strand, within MPMX26_03191at 45.560 kb on - strand, within MPMX26_03191at 45.560 kb on - strand, within MPMX26_03191at 45.564 kb on - strand, within MPMX26_03191at 45.565 kb on - strand, within MPMX26_03191at 45.610 kb on - strand, within MPMX26_03191at 45.610 kb on - strand, within MPMX26_03191at 45.615 kb on - strand, within MPMX26_03191at 45.615 kb on - strand, within MPMX26_03191at 45.657 kb on - strand, within MPMX26_03191at 45.688 kb on - strand, within MPMX26_03191at 45.716 kb on - strand, within MPMX26_03191at 45.726 kb on - strand, within MPMX26_03191at 45.728 kb on - strand, within MPMX26_03191at 45.735 kb on - strand, within MPMX26_03191at 45.735 kb on - strand, within MPMX26_03191at 45.735 kb on - strand, within MPMX26_03191at 45.761 kb on - strand, within MPMX26_03191at 45.780 kb on - strand, within MPMX26_03191at 45.828 kb on - strand, within MPMX26_03191at 45.887 kb on - strand, within MPMX26_03191at 45.887 kb on - strand, within MPMX26_03191at 45.930 kb on - strand, within MPMX26_03191at 45.996 kb on - strand, within MPMX26_03191at 45.996 kb on - strand, within MPMX26_03191at 45.998 kb on - strand, within MPMX26_03191at 46.006 kb on - strand, within MPMX26_03191at 46.006 kb on - strand, within MPMX26_03191at 46.006 kb on - strand, within MPMX26_03191at 46.006 kb on - strand, within MPMX26_03191at 46.099 kb on - strand, within MPMX26_03191at 46.109 kb on - strand, within MPMX26_03191at 46.132 kb on - strand, within MPMX26_03191at 46.202 kb on - strand, within MPMX26_03191at 46.202 kb on - strand, within MPMX26_03191at 46.202 kb on - strand, within MPMX26_03191at 46.269 kb on - strandat 46.274 kb on - strandat 46.281 kb on - strandat 46.286 kb on - strandat 46.347 kb on + strandat 46.355 kb on - strandat 46.420 kb on + strandat 46.425 kb on - strandat 46.438 kb on - strandat 46.439 kb on - strandat 46.460 kb on - strandat 46.493 kb on - strandat 46.495 kb on - strandat 46.505 kb on - strandat 46.527 kb on - strandat 46.527 kb on - strandat 46.527 kb on - strandat 46.527 kb on - strandat 46.586 kb on - strand, within MPMX26_03192at 46.602 kb on - strand, within MPMX26_03192at 46.606 kb on - strand, within MPMX26_03192at 46.622 kb on - strand, within MPMX26_03192at 46.624 kb on - strand, within MPMX26_03192at 46.627 kb on - strand, within MPMX26_03192at 46.632 kb on - strand, within MPMX26_03192at 46.632 kb on - strand, within MPMX26_03192at 46.632 kb on - strand, within MPMX26_03192at 46.632 kb on - strand, within MPMX26_03192at 46.632 kb on - strand, within MPMX26_03192at 46.632 kb on - strand, within MPMX26_03192at 46.681 kb on + strand, within MPMX26_03192at 46.699 kb on + strand, within MPMX26_03192at 46.707 kb on - strand, within MPMX26_03192at 46.723 kb on - strand, within MPMX26_03192at 46.736 kb on - strand, within MPMX26_03192at 46.736 kb on - strand, within MPMX26_03192at 46.754 kb on + strand, within MPMX26_03192at 46.757 kb on - strand, within MPMX26_03192at 46.762 kb on - strand, within MPMX26_03192at 46.762 kb on - strand, within MPMX26_03192at 46.762 kb on - strand, within MPMX26_03192at 46.762 kb on - strand, within MPMX26_03192at 46.762 kb on - strand, within MPMX26_03192at 46.762 kb on - strand, within MPMX26_03192at 46.762 kb on - strand, within MPMX26_03192at 46.762 kb on - strand, within MPMX26_03192at 46.762 kb on - strand, within MPMX26_03192at 46.762 kb on - strand, within MPMX26_03192at 46.762 kb on - strand, within MPMX26_03192at 46.848 kb on - strandat 46.848 kb on - strandat 46.848 kb on - strandat 46.848 kb on - strandat 46.848 kb on - strandat 46.858 kb on + strandat 46.858 kb on + strandat 46.876 kb on - strandat 46.879 kb on - strandat 46.881 kb on - strandat 46.883 kb on + strandat 46.921 kb on - strand, within MPMX26_03193at 46.921 kb on - strand, within MPMX26_03193at 46.923 kb on + strand, within MPMX26_03193at 46.923 kb on + strand, within MPMX26_03193at 46.923 kb on + strand, within MPMX26_03193at 46.923 kb on + strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.931 kb on - strand, within MPMX26_03193at 46.938 kb on + strand, within MPMX26_03193at 46.941 kb on - strand, within MPMX26_03193at 46.941 kb on - strand, within MPMX26_03193at 46.951 kb on - strand, within MPMX26_03193at 46.951 kb on - strand, within MPMX26_03193at 47.001 kb on + strand, within MPMX26_03193at 47.051 kb on + strand, within MPMX26_03193at 47.051 kb on + strand, within MPMX26_03193at 47.059 kb on - strand, within MPMX26_03193at 47.059 kb on - strand, within MPMX26_03193at 47.059 kb on - strand, within MPMX26_03193at 47.059 kb on - strand, within MPMX26_03193at 47.059 kb on - strand, within MPMX26_03193at 47.059 kb on - strand, within MPMX26_03193at 47.059 kb on - strand, within MPMX26_03193at 47.059 kb on - strand, within MPMX26_03193at 47.069 kb on - strand, within MPMX26_03193at 47.117 kb on - strand, within MPMX26_03193at 47.127 kb on - strand, within MPMX26_03193at 47.157 kb on - strand, within MPMX26_03193at 47.157 kb on - strand, within MPMX26_03193at 47.177 kb on + strand, within MPMX26_03193at 47.180 kb on + strand, within MPMX26_03193at 47.180 kb on - strand, within MPMX26_03193at 47.188 kb on - strand, within MPMX26_03193at 47.190 kb on - strand, within MPMX26_03193at 47.195 kb on - strand, within MPMX26_03193at 47.195 kb on - strand, within MPMX26_03193at 47.195 kb on - strand, within MPMX26_03193at 47.195 kb on - strand, within MPMX26_03193at 47.228 kb on - strand, within MPMX26_03193at 47.228 kb on - strand, within MPMX26_03193at 47.230 kb on - strand, within MPMX26_03193at 47.255 kb on - strand, within MPMX26_03193at 47.278 kb on - strand, within MPMX26_03193at 47.288 kb on - strand, within MPMX26_03193at 47.292 kb on + strand, within MPMX26_03193at 47.300 kb on - strand, within MPMX26_03193at 47.307 kb on - strand, within MPMX26_03193at 47.307 kb on - strand, within MPMX26_03193at 47.307 kb on - strand, within MPMX26_03193at 47.307 kb on - strand, within MPMX26_03193at 47.307 kb on - strand, within MPMX26_03193at 47.315 kb on - strand, within MPMX26_03193at 47.320 kb on - strand, within MPMX26_03193at 47.346 kb on - strand, within MPMX26_03193at 47.393 kb on - strand, within MPMX26_03193at 47.423 kb on - strand, within MPMX26_03193at 47.430 kb on - strand, within MPMX26_03193at 47.477 kb on - strandat 47.477 kb on - strandat 47.483 kb on - strandat 47.483 kb on - strandat 47.483 kb on - strandat 47.483 kb on - strandat 47.483 kb on - strandat 47.493 kb on - strandat 47.493 kb on - strandat 47.493 kb on - strandat 47.528 kb on - strandat 47.528 kb on - strandat 47.624 kb on - strand, within MPMX26_03194at 47.669 kb on - strand, within MPMX26_03194at 47.761 kb on - strandat 47.764 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB
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45,528 - MPMX26_03191 0.65 -0.0
45,542 - MPMX26_03191 0.65 -1.3
45,554 - MPMX26_03191 0.66 +0.1
45,554 - MPMX26_03191 0.66 -0.6
45,554 - MPMX26_03191 0.66 -0.8
45,554 - MPMX26_03191 0.66 -0.3
45,554 - MPMX26_03191 0.66 -0.5
45,554 - MPMX26_03191 0.66 +0.2
45,560 - MPMX26_03191 0.66 -0.1
45,560 - MPMX26_03191 0.66 +0.5
45,560 - MPMX26_03191 0.66 -1.0
45,564 - MPMX26_03191 0.66 -0.0
45,565 - MPMX26_03191 0.66 -0.0
45,610 - MPMX26_03191 0.68 -0.3
45,610 - MPMX26_03191 0.68 +0.2
45,615 - MPMX26_03191 0.68 +1.8
45,615 - MPMX26_03191 0.68 -0.2
45,657 - MPMX26_03191 0.69 -2.0
45,688 - MPMX26_03191 0.71 -0.6
45,716 - MPMX26_03191 0.72 +0.1
45,726 - MPMX26_03191 0.72 +0.0
45,728 - MPMX26_03191 0.72 +0.6
45,735 - MPMX26_03191 0.72 -0.7
45,735 - MPMX26_03191 0.72 -0.2
45,735 - MPMX26_03191 0.72 -0.2
45,761 - MPMX26_03191 0.73 -0.1
45,780 - MPMX26_03191 0.74 +0.6
45,828 - MPMX26_03191 0.76 -1.2
45,887 - MPMX26_03191 0.78 -2.0
45,887 - MPMX26_03191 0.78 +1.2
45,930 - MPMX26_03191 0.79 -0.0
45,996 - MPMX26_03191 0.82 -0.3
45,996 - MPMX26_03191 0.82 -0.3
45,998 - MPMX26_03191 0.82 +0.3
46,006 - MPMX26_03191 0.82 +0.2
46,006 - MPMX26_03191 0.82 +0.4
46,006 - MPMX26_03191 0.82 +0.1
46,006 - MPMX26_03191 0.82 +0.0
46,099 - MPMX26_03191 0.86 +0.5
46,109 - MPMX26_03191 0.86 +0.2
46,132 - MPMX26_03191 0.87 +0.9
46,202 - MPMX26_03191 0.89 +0.3
46,202 - MPMX26_03191 0.89 -0.6
46,202 - MPMX26_03191 0.89 +0.1
46,269 - +0.8
46,274 - +0.1
46,281 - -0.6
46,286 - +0.2
46,347 + +0.0
46,355 - +0.7
46,420 + -0.6
46,425 - -0.9
46,438 - +1.8
46,439 - -0.4
46,460 - +0.1
46,493 - +0.1
46,495 - -0.1
46,505 - +0.4
46,527 - -0.1
46,527 - -0.2
46,527 - -0.6
46,527 - -0.1
46,586 - MPMX26_03192 0.29 +0.3
46,602 - MPMX26_03192 0.34 +0.5
46,606 - MPMX26_03192 0.36 +0.9
46,622 - MPMX26_03192 0.41 +0.8
46,624 - MPMX26_03192 0.42 +0.1
46,627 - MPMX26_03192 0.43 +0.1
46,632 - MPMX26_03192 0.45 -0.2
46,632 - MPMX26_03192 0.45 -0.1
46,632 - MPMX26_03192 0.45 +0.7
46,632 - MPMX26_03192 0.45 +1.0
46,632 - MPMX26_03192 0.45 +0.4
46,632 - MPMX26_03192 0.45 -0.5
46,681 + MPMX26_03192 0.61 +1.1
46,699 + MPMX26_03192 0.67 -0.6
46,707 - MPMX26_03192 0.70 -0.5
46,723 - MPMX26_03192 0.76 +0.1
46,736 - MPMX26_03192 0.80 +0.0
46,736 - MPMX26_03192 0.80 +0.3
46,754 + MPMX26_03192 0.86 +1.1
46,757 - MPMX26_03192 0.87 +0.0
46,762 - MPMX26_03192 0.89 -0.2
46,762 - MPMX26_03192 0.89 +0.2
46,762 - MPMX26_03192 0.89 -0.3
46,762 - MPMX26_03192 0.89 +0.3
46,762 - MPMX26_03192 0.89 +0.4
46,762 - MPMX26_03192 0.89 +0.3
46,762 - MPMX26_03192 0.89 -0.5
46,762 - MPMX26_03192 0.89 -0.1
46,762 - MPMX26_03192 0.89 +0.5
46,762 - MPMX26_03192 0.89 -0.2
46,762 - MPMX26_03192 0.89 -0.8
46,848 - +1.8
46,848 - +0.6
46,848 - +1.0
46,848 - -0.9
46,848 - -0.4
46,858 + -0.3
46,858 + -0.8
46,876 - +1.0
46,879 - -0.2
46,881 - -0.4
46,883 + +0.5
46,921 - MPMX26_03193 0.15 +0.2
46,921 - MPMX26_03193 0.15 -0.5
46,923 + MPMX26_03193 0.15 +2.2
46,923 + MPMX26_03193 0.15 +0.7
46,923 + MPMX26_03193 0.15 +0.6
46,923 + MPMX26_03193 0.15 -0.3
46,931 - MPMX26_03193 0.16 -0.5
46,931 - MPMX26_03193 0.16 +0.7
46,931 - MPMX26_03193 0.16 -0.2
46,931 - MPMX26_03193 0.16 -1.2
46,931 - MPMX26_03193 0.16 +0.2
46,931 - MPMX26_03193 0.16 -0.4
46,931 - MPMX26_03193 0.16 +0.8
46,931 - MPMX26_03193 0.16 +0.3
46,931 - MPMX26_03193 0.16 +0.1
46,931 - MPMX26_03193 0.16 -1.4
46,931 - MPMX26_03193 0.16 -0.7
46,931 - MPMX26_03193 0.16 +0.6
46,931 - MPMX26_03193 0.16 +0.1
46,931 - MPMX26_03193 0.16 +0.2
46,931 - MPMX26_03193 0.16 +0.0
46,931 - MPMX26_03193 0.16 -0.7
46,931 - MPMX26_03193 0.16 +0.1
46,931 - MPMX26_03193 0.16 -0.2
46,931 - MPMX26_03193 0.16 -0.0
46,931 - MPMX26_03193 0.16 +0.3
46,931 - MPMX26_03193 0.16 +0.4
46,931 - MPMX26_03193 0.16 -0.4
46,931 - MPMX26_03193 0.16 +0.8
46,931 - MPMX26_03193 0.16 +0.2
46,931 - MPMX26_03193 0.16 +0.9
46,931 - MPMX26_03193 0.16 -0.3
46,931 - MPMX26_03193 0.16 +0.1
46,931 - MPMX26_03193 0.16 -0.3
46,931 - MPMX26_03193 0.16 -0.0
46,931 - MPMX26_03193 0.16 +0.8
46,938 + MPMX26_03193 0.17 +0.4
46,941 - MPMX26_03193 0.17 -0.6
46,941 - MPMX26_03193 0.17 -1.5
46,951 - MPMX26_03193 0.19 +0.2
46,951 - MPMX26_03193 0.19 -0.2
47,001 + MPMX26_03193 0.26 +0.2
47,051 + MPMX26_03193 0.33 +0.3
47,051 + MPMX26_03193 0.33 -0.2
47,059 - MPMX26_03193 0.34 +0.2
47,059 - MPMX26_03193 0.34 -0.5
47,059 - MPMX26_03193 0.34 -0.1
47,059 - MPMX26_03193 0.34 +0.1
47,059 - MPMX26_03193 0.34 +0.5
47,059 - MPMX26_03193 0.34 +0.0
47,059 - MPMX26_03193 0.34 -0.9
47,059 - MPMX26_03193 0.34 -0.5
47,069 - MPMX26_03193 0.35 +0.7
47,117 - MPMX26_03193 0.42 -0.4
47,127 - MPMX26_03193 0.43 +0.1
47,157 - MPMX26_03193 0.48 +0.3
47,157 - MPMX26_03193 0.48 +0.0
47,177 + MPMX26_03193 0.50 +1.1
47,180 + MPMX26_03193 0.51 -0.2
47,180 - MPMX26_03193 0.51 -0.0
47,188 - MPMX26_03193 0.52 +0.0
47,190 - MPMX26_03193 0.52 +0.2
47,195 - MPMX26_03193 0.53 +0.4
47,195 - MPMX26_03193 0.53 -0.1
47,195 - MPMX26_03193 0.53 -0.2
47,195 - MPMX26_03193 0.53 -0.1
47,228 - MPMX26_03193 0.58 -0.3
47,228 - MPMX26_03193 0.58 +0.5
47,230 - MPMX26_03193 0.58 +0.1
47,255 - MPMX26_03193 0.61 +0.3
47,278 - MPMX26_03193 0.65 +0.4
47,288 - MPMX26_03193 0.66 +0.2
47,292 + MPMX26_03193 0.67 -0.5
47,300 - MPMX26_03193 0.68 +0.7
47,307 - MPMX26_03193 0.69 +1.1
47,307 - MPMX26_03193 0.69 +0.2
47,307 - MPMX26_03193 0.69 +0.5
47,307 - MPMX26_03193 0.69 -0.0
47,307 - MPMX26_03193 0.69 +0.9
47,315 - MPMX26_03193 0.70 +0.5
47,320 - MPMX26_03193 0.70 +0.5
47,346 - MPMX26_03193 0.74 -0.5
47,393 - MPMX26_03193 0.81 -0.1
47,423 - MPMX26_03193 0.85 -0.3
47,430 - MPMX26_03193 0.86 +1.2
47,477 - -0.1
47,477 - +0.3
47,483 - -0.0
47,483 - +0.1
47,483 - -0.0
47,483 - -0.2
47,483 - -1.0
47,493 - +2.1
47,493 - -0.1
47,493 - -0.2
47,528 - +0.3
47,528 - -0.2
47,624 - MPMX26_03194 0.24 -2.3
47,669 - MPMX26_03194 0.46 -2.3
47,761 - -1.3
47,764 - -1.6

Or see this region's nucleotide sequence