Experiment: TSB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_03176 and MPMX26_03177 are separated by 98 nucleotides MPMX26_03177 and MPMX26_03178 are separated by 185 nucleotides MPMX26_03178 and MPMX26_03179 overlap by 4 nucleotides MPMX26_03179 and MPMX26_03180 are separated by 253 nucleotides MPMX26_03180 and MPMX26_03181 are separated by 203 nucleotides
MPMX26_03176: MPMX26_03176 - IS6 family transposase IS1006, at 33,167 to 33,871
_03176
MPMX26_03177: MPMX26_03177 - hypothetical protein, at 33,970 to 34,341
_03177
MPMX26_03178: MPMX26_03178 - hypothetical protein, at 34,527 to 34,859
_03178
MPMX26_03179: MPMX26_03179 - hypothetical protein, at 34,856 to 35,104
_03179
MPMX26_03180: MPMX26_03180 - hypothetical protein, at 35,358 to 35,561
_03180
MPMX26_03181: MPMX26_03181 - DNA-invertase hin, at 35,765 to 36,331
_03181
Position (kb) 34
35 Strain fitness (log2 ratio) -1
0
1
2 at 33.566 kb on + strand, within MPMX26_03176 at 33.568 kb on + strand, within MPMX26_03176 at 33.584 kb on + strand, within MPMX26_03176 at 33.589 kb on + strand, within MPMX26_03176 at 33.642 kb on + strand, within MPMX26_03176 at 33.658 kb on + strand, within MPMX26_03176 at 33.669 kb on + strand, within MPMX26_03176 at 33.702 kb on - strand, within MPMX26_03176 at 33.706 kb on - strand, within MPMX26_03176 at 33.712 kb on + strand, within MPMX26_03176 at 33.768 kb on + strand, within MPMX26_03176 at 33.776 kb on + strand, within MPMX26_03176 at 33.780 kb on + strand, within MPMX26_03176 at 33.780 kb on + strand, within MPMX26_03176 at 33.780 kb on + strand, within MPMX26_03176 at 33.780 kb on + strand, within MPMX26_03176 at 33.790 kb on + strand, within MPMX26_03176 at 33.790 kb on + strand, within MPMX26_03176 at 33.790 kb on + strand, within MPMX26_03176 at 33.790 kb on + strand, within MPMX26_03176 at 33.790 kb on + strand, within MPMX26_03176 at 33.797 kb on + strand, within MPMX26_03176 at 33.802 kb on + strand at 33.834 kb on - strand at 33.956 kb on - strand at 33.956 kb on - strand at 34.005 kb on - strand at 34.074 kb on - strand, within MPMX26_03177 at 34.083 kb on - strand, within MPMX26_03177 at 34.083 kb on - strand, within MPMX26_03177 at 34.083 kb on - strand, within MPMX26_03177 at 34.083 kb on - strand, within MPMX26_03177 at 34.164 kb on - strand, within MPMX26_03177 at 34.183 kb on - strand, within MPMX26_03177 at 34.225 kb on - strand, within MPMX26_03177 at 34.261 kb on - strand, within MPMX26_03177 at 34.261 kb on - strand, within MPMX26_03177 at 34.435 kb on + strand at 34.622 kb on - strand, within MPMX26_03178 at 34.622 kb on - strand, within MPMX26_03178 at 34.622 kb on - strand, within MPMX26_03178 at 34.645 kb on - strand, within MPMX26_03178 at 34.645 kb on - strand, within MPMX26_03178 at 34.645 kb on - strand, within MPMX26_03178 at 34.669 kb on - strand, within MPMX26_03178 at 34.871 kb on - strand at 34.893 kb on - strand, within MPMX26_03179 at 34.901 kb on - strand, within MPMX26_03179 at 34.901 kb on - strand, within MPMX26_03179 at 34.908 kb on - strand, within MPMX26_03179 at 34.916 kb on - strand, within MPMX26_03179 at 34.935 kb on - strand, within MPMX26_03179 at 34.940 kb on - strand, within MPMX26_03179 at 34.940 kb on - strand, within MPMX26_03179 at 34.940 kb on - strand, within MPMX26_03179 at 34.940 kb on - strand, within MPMX26_03179 at 34.940 kb on - strand, within MPMX26_03179 at 34.940 kb on - strand, within MPMX26_03179 at 35.119 kb on - strand at 35.124 kb on - strand at 35.124 kb on - strand at 35.130 kb on + strand at 35.132 kb on + strand at 35.132 kb on + strand at 35.132 kb on + strand at 35.132 kb on + strand at 35.132 kb on + strand at 35.132 kb on + strand at 35.132 kb on + strand at 35.132 kb on + strand at 35.140 kb on - strand at 35.140 kb on - strand at 35.140 kb on - strand at 35.140 kb on - strand at 35.140 kb on - strand at 35.140 kb on - strand at 35.140 kb on - strand at 35.204 kb on - strand at 35.291 kb on + strand at 35.291 kb on + strand at 35.291 kb on + strand at 35.291 kb on + strand at 35.291 kb on + strand at 35.291 kb on + strand at 35.291 kb on + strand at 35.291 kb on + strand at 35.291 kb on + strand at 35.299 kb on - strand at 35.332 kb on + strand at 35.342 kb on + strand at 35.342 kb on + strand at 35.397 kb on + strand, within MPMX26_03180 at 35.397 kb on + strand, within MPMX26_03180 at 35.397 kb on + strand, within MPMX26_03180 at 35.493 kb on + strand, within MPMX26_03180 at 35.514 kb on + strand, within MPMX26_03180 at 35.515 kb on + strand, within MPMX26_03180 at 35.518 kb on + strand, within MPMX26_03180 at 35.544 kb on + strand at 35.555 kb on + strand at 35.555 kb on + strand at 35.581 kb on + strand at 35.784 kb on - strand at 35.854 kb on - strand, within MPMX26_03181 at 35.856 kb on - strand, within MPMX26_03181
Per-strain Table
Position Strand Gene LocusTag Fraction TSB remove 33,566 + MPMX26_03176 0.57 +0.8 33,568 + MPMX26_03176 0.57 +0.2 33,584 + MPMX26_03176 0.59 -0.4 33,589 + MPMX26_03176 0.60 +0.5 33,642 + MPMX26_03176 0.67 -0.3 33,658 + MPMX26_03176 0.70 +0.3 33,669 + MPMX26_03176 0.71 +0.8 33,702 - MPMX26_03176 0.76 -1.4 33,706 - MPMX26_03176 0.76 -0.4 33,712 + MPMX26_03176 0.77 -0.8 33,768 + MPMX26_03176 0.85 +1.4 33,776 + MPMX26_03176 0.86 +1.0 33,780 + MPMX26_03176 0.87 +0.7 33,780 + MPMX26_03176 0.87 -0.9 33,780 + MPMX26_03176 0.87 -0.1 33,780 + MPMX26_03176 0.87 -0.0 33,790 + MPMX26_03176 0.88 +0.4 33,790 + MPMX26_03176 0.88 -0.2 33,790 + MPMX26_03176 0.88 +0.3 33,790 + MPMX26_03176 0.88 -0.3 33,790 + MPMX26_03176 0.88 +0.1 33,797 + MPMX26_03176 0.89 -0.1 33,802 + -0.3 33,834 - +0.5 33,956 - +0.8 33,956 - -0.1 34,005 - +0.6 34,074 - MPMX26_03177 0.28 +1.0 34,083 - MPMX26_03177 0.30 +0.6 34,083 - MPMX26_03177 0.30 +1.1 34,083 - MPMX26_03177 0.30 +0.4 34,083 - MPMX26_03177 0.30 -0.3 34,164 - MPMX26_03177 0.52 -1.0 34,183 - MPMX26_03177 0.57 -0.4 34,225 - MPMX26_03177 0.69 +1.1 34,261 - MPMX26_03177 0.78 +1.0 34,261 - MPMX26_03177 0.78 +0.4 34,435 + -0.3 34,622 - MPMX26_03178 0.29 -0.3 34,622 - MPMX26_03178 0.29 -0.7 34,622 - MPMX26_03178 0.29 -0.7 34,645 - MPMX26_03178 0.35 +0.2 34,645 - MPMX26_03178 0.35 -0.3 34,645 - MPMX26_03178 0.35 +0.4 34,669 - MPMX26_03178 0.43 -0.3 34,871 - +0.8 34,893 - MPMX26_03179 0.15 -0.2 34,901 - MPMX26_03179 0.18 +0.5 34,901 - MPMX26_03179 0.18 -0.3 34,908 - MPMX26_03179 0.21 +0.1 34,916 - MPMX26_03179 0.24 -0.0 34,935 - MPMX26_03179 0.32 +0.8 34,940 - MPMX26_03179 0.34 -1.5 34,940 - MPMX26_03179 0.34 -0.2 34,940 - MPMX26_03179 0.34 +1.0 34,940 - MPMX26_03179 0.34 +1.1 34,940 - MPMX26_03179 0.34 +1.1 34,940 - MPMX26_03179 0.34 -0.1 35,119 - +0.2 35,124 - -0.8 35,124 - +0.6 35,130 + +0.6 35,132 + -0.1 35,132 + -0.3 35,132 + -0.6 35,132 + +1.8 35,132 + +0.3 35,132 + -1.0 35,132 + -0.5 35,132 + +0.8 35,140 - -1.2 35,140 - -0.1 35,140 - +0.5 35,140 - +1.0 35,140 - +1.0 35,140 - +0.7 35,140 - +2.6 35,204 - +1.2 35,291 + -0.5 35,291 + -0.3 35,291 + +0.2 35,291 + -0.1 35,291 + +0.1 35,291 + +0.5 35,291 + -0.9 35,291 + -0.0 35,291 + -0.1 35,299 - +0.2 35,332 + +0.8 35,342 + -1.2 35,342 + +0.5 35,397 + MPMX26_03180 0.19 +1.5 35,397 + MPMX26_03180 0.19 -0.0 35,397 + MPMX26_03180 0.19 -0.4 35,493 + MPMX26_03180 0.66 +0.8 35,514 + MPMX26_03180 0.76 -0.2 35,515 + MPMX26_03180 0.77 +0.1 35,518 + MPMX26_03180 0.78 +0.4 35,544 + -0.6 35,555 + -0.2 35,555 + +1.2 35,581 + -0.0 35,784 - -0.4 35,854 - MPMX26_03181 0.16 -0.0 35,856 - MPMX26_03181 0.16 -0.3
Or see this region's nucleotide sequence