Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02228

Experiment: TSB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02227 and MPMX26_02228 are separated by 115 nucleotidesMPMX26_02228 and MPMX26_02229 are separated by 323 nucleotidesMPMX26_02229 and MPMX26_02230 are separated by 178 nucleotides MPMX26_02227: MPMX26_02227 - Leucine efflux protein, at 2,287,091 to 2,287,696 _02227 MPMX26_02228: MPMX26_02228 - Leucine-responsive regulatory protein, at 2,287,812 to 2,288,306 _02228 MPMX26_02229: MPMX26_02229 - hypothetical protein, at 2,288,630 to 2,289,001 _02229 MPMX26_02230: MPMX26_02230 - Tyrosine recombinase XerC, at 2,289,180 to 2,290,100 _02230 Position (kb) 2287 2288 2289Strain fitness (log2 ratio) -2 -1 0 1 2at 2287.223 kb on - strand, within MPMX26_02227at 2287.254 kb on - strand, within MPMX26_02227at 2287.325 kb on - strand, within MPMX26_02227at 2287.330 kb on - strand, within MPMX26_02227at 2287.378 kb on - strand, within MPMX26_02227at 2287.454 kb on - strand, within MPMX26_02227at 2287.490 kb on - strand, within MPMX26_02227at 2287.505 kb on - strand, within MPMX26_02227at 2287.588 kb on - strand, within MPMX26_02227at 2287.598 kb on - strand, within MPMX26_02227at 2287.636 kb on - strandat 2287.913 kb on + strand, within MPMX26_02228at 2287.913 kb on + strand, within MPMX26_02228at 2287.920 kb on + strand, within MPMX26_02228at 2287.922 kb on + strand, within MPMX26_02228at 2287.926 kb on + strand, within MPMX26_02228at 2287.955 kb on + strand, within MPMX26_02228at 2287.964 kb on + strand, within MPMX26_02228at 2287.988 kb on + strand, within MPMX26_02228at 2287.988 kb on + strand, within MPMX26_02228at 2287.988 kb on + strand, within MPMX26_02228at 2287.988 kb on + strand, within MPMX26_02228at 2287.988 kb on + strand, within MPMX26_02228at 2288.001 kb on + strand, within MPMX26_02228at 2288.106 kb on + strand, within MPMX26_02228at 2288.111 kb on + strand, within MPMX26_02228at 2288.111 kb on + strand, within MPMX26_02228at 2288.118 kb on + strand, within MPMX26_02228at 2288.149 kb on + strand, within MPMX26_02228at 2288.158 kb on + strand, within MPMX26_02228at 2288.159 kb on + strand, within MPMX26_02228at 2288.178 kb on + strand, within MPMX26_02228at 2288.178 kb on + strand, within MPMX26_02228at 2288.178 kb on + strand, within MPMX26_02228at 2288.292 kb on + strandat 2288.672 kb on - strand, within MPMX26_02229at 2288.696 kb on - strand, within MPMX26_02229at 2288.717 kb on - strand, within MPMX26_02229at 2288.719 kb on - strand, within MPMX26_02229at 2288.746 kb on - strand, within MPMX26_02229at 2288.807 kb on - strand, within MPMX26_02229at 2288.816 kb on - strand, within MPMX26_02229at 2288.821 kb on - strand, within MPMX26_02229at 2288.837 kb on - strand, within MPMX26_02229at 2288.864 kb on - strand, within MPMX26_02229at 2288.869 kb on - strand, within MPMX26_02229at 2288.869 kb on - strand, within MPMX26_02229at 2288.869 kb on - strand, within MPMX26_02229at 2288.869 kb on - strand, within MPMX26_02229at 2288.869 kb on - strand, within MPMX26_02229at 2289.204 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB
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2,287,223 - MPMX26_02227 0.22 -0.3
2,287,254 - MPMX26_02227 0.27 +1.0
2,287,325 - MPMX26_02227 0.39 -0.4
2,287,330 - MPMX26_02227 0.39 +0.5
2,287,378 - MPMX26_02227 0.47 -1.2
2,287,454 - MPMX26_02227 0.60 -0.1
2,287,490 - MPMX26_02227 0.66 +1.8
2,287,505 - MPMX26_02227 0.68 -2.2
2,287,588 - MPMX26_02227 0.82 -0.4
2,287,598 - MPMX26_02227 0.84 -0.9
2,287,636 - +0.1
2,287,913 + MPMX26_02228 0.20 -1.2
2,287,913 + MPMX26_02228 0.20 +0.2
2,287,920 + MPMX26_02228 0.22 +0.9
2,287,922 + MPMX26_02228 0.22 +0.2
2,287,926 + MPMX26_02228 0.23 +0.2
2,287,955 + MPMX26_02228 0.29 +0.5
2,287,964 + MPMX26_02228 0.31 -0.4
2,287,988 + MPMX26_02228 0.36 -0.1
2,287,988 + MPMX26_02228 0.36 +0.1
2,287,988 + MPMX26_02228 0.36 +0.1
2,287,988 + MPMX26_02228 0.36 -0.2
2,287,988 + MPMX26_02228 0.36 +0.1
2,288,001 + MPMX26_02228 0.38 +0.3
2,288,106 + MPMX26_02228 0.59 +0.3
2,288,111 + MPMX26_02228 0.60 +0.7
2,288,111 + MPMX26_02228 0.60 -0.4
2,288,118 + MPMX26_02228 0.62 -0.5
2,288,149 + MPMX26_02228 0.68 +0.4
2,288,158 + MPMX26_02228 0.70 -0.3
2,288,159 + MPMX26_02228 0.70 +0.0
2,288,178 + MPMX26_02228 0.74 +0.2
2,288,178 + MPMX26_02228 0.74 +0.4
2,288,178 + MPMX26_02228 0.74 -0.2
2,288,292 + -0.3
2,288,672 - MPMX26_02229 0.11 +0.4
2,288,696 - MPMX26_02229 0.18 -0.7
2,288,717 - MPMX26_02229 0.23 +0.5
2,288,719 - MPMX26_02229 0.24 -0.2
2,288,746 - MPMX26_02229 0.31 +0.7
2,288,807 - MPMX26_02229 0.48 +0.1
2,288,816 - MPMX26_02229 0.50 -0.0
2,288,821 - MPMX26_02229 0.51 +0.1
2,288,837 - MPMX26_02229 0.56 -0.2
2,288,864 - MPMX26_02229 0.63 +0.4
2,288,869 - MPMX26_02229 0.64 +0.2
2,288,869 - MPMX26_02229 0.64 +0.6
2,288,869 - MPMX26_02229 0.64 -0.6
2,288,869 - MPMX26_02229 0.64 +0.3
2,288,869 - MPMX26_02229 0.64 +0.5
2,289,204 - -0.7

Or see this region's nucleotide sequence