Experiment: TSB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02227 and MPMX26_02228 are separated by 115 nucleotides MPMX26_02228 and MPMX26_02229 are separated by 323 nucleotides MPMX26_02229 and MPMX26_02230 are separated by 178 nucleotides
MPMX26_02227: MPMX26_02227 - Leucine efflux protein, at 2,287,091 to 2,287,696
_02227
MPMX26_02228: MPMX26_02228 - Leucine-responsive regulatory protein, at 2,287,812 to 2,288,306
_02228
MPMX26_02229: MPMX26_02229 - hypothetical protein, at 2,288,630 to 2,289,001
_02229
MPMX26_02230: MPMX26_02230 - Tyrosine recombinase XerC, at 2,289,180 to 2,290,100
_02230
Position (kb)
2287
2288
2289 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2287.223 kb on - strand, within MPMX26_02227 at 2287.254 kb on - strand, within MPMX26_02227 at 2287.325 kb on - strand, within MPMX26_02227 at 2287.330 kb on - strand, within MPMX26_02227 at 2287.378 kb on - strand, within MPMX26_02227 at 2287.454 kb on - strand, within MPMX26_02227 at 2287.490 kb on - strand, within MPMX26_02227 at 2287.505 kb on - strand, within MPMX26_02227 at 2287.588 kb on - strand, within MPMX26_02227 at 2287.598 kb on - strand, within MPMX26_02227 at 2287.636 kb on - strand at 2287.913 kb on + strand, within MPMX26_02228 at 2287.913 kb on + strand, within MPMX26_02228 at 2287.920 kb on + strand, within MPMX26_02228 at 2287.922 kb on + strand, within MPMX26_02228 at 2287.926 kb on + strand, within MPMX26_02228 at 2287.955 kb on + strand, within MPMX26_02228 at 2287.964 kb on + strand, within MPMX26_02228 at 2287.988 kb on + strand, within MPMX26_02228 at 2287.988 kb on + strand, within MPMX26_02228 at 2287.988 kb on + strand, within MPMX26_02228 at 2287.988 kb on + strand, within MPMX26_02228 at 2287.988 kb on + strand, within MPMX26_02228 at 2288.001 kb on + strand, within MPMX26_02228 at 2288.106 kb on + strand, within MPMX26_02228 at 2288.111 kb on + strand, within MPMX26_02228 at 2288.111 kb on + strand, within MPMX26_02228 at 2288.118 kb on + strand, within MPMX26_02228 at 2288.149 kb on + strand, within MPMX26_02228 at 2288.158 kb on + strand, within MPMX26_02228 at 2288.159 kb on + strand, within MPMX26_02228 at 2288.178 kb on + strand, within MPMX26_02228 at 2288.178 kb on + strand, within MPMX26_02228 at 2288.178 kb on + strand, within MPMX26_02228 at 2288.292 kb on + strand at 2288.672 kb on - strand, within MPMX26_02229 at 2288.696 kb on - strand, within MPMX26_02229 at 2288.717 kb on - strand, within MPMX26_02229 at 2288.719 kb on - strand, within MPMX26_02229 at 2288.746 kb on - strand, within MPMX26_02229 at 2288.807 kb on - strand, within MPMX26_02229 at 2288.816 kb on - strand, within MPMX26_02229 at 2288.821 kb on - strand, within MPMX26_02229 at 2288.837 kb on - strand, within MPMX26_02229 at 2288.864 kb on - strand, within MPMX26_02229 at 2288.869 kb on - strand, within MPMX26_02229 at 2288.869 kb on - strand, within MPMX26_02229 at 2288.869 kb on - strand, within MPMX26_02229 at 2288.869 kb on - strand, within MPMX26_02229 at 2288.869 kb on - strand, within MPMX26_02229 at 2289.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB remove 2,287,223 - MPMX26_02227 0.22 -0.3 2,287,254 - MPMX26_02227 0.27 +1.0 2,287,325 - MPMX26_02227 0.39 -0.4 2,287,330 - MPMX26_02227 0.39 +0.5 2,287,378 - MPMX26_02227 0.47 -1.2 2,287,454 - MPMX26_02227 0.60 -0.1 2,287,490 - MPMX26_02227 0.66 +1.8 2,287,505 - MPMX26_02227 0.68 -2.2 2,287,588 - MPMX26_02227 0.82 -0.4 2,287,598 - MPMX26_02227 0.84 -0.9 2,287,636 - +0.1 2,287,913 + MPMX26_02228 0.20 -1.2 2,287,913 + MPMX26_02228 0.20 +0.2 2,287,920 + MPMX26_02228 0.22 +0.9 2,287,922 + MPMX26_02228 0.22 +0.2 2,287,926 + MPMX26_02228 0.23 +0.2 2,287,955 + MPMX26_02228 0.29 +0.5 2,287,964 + MPMX26_02228 0.31 -0.4 2,287,988 + MPMX26_02228 0.36 -0.1 2,287,988 + MPMX26_02228 0.36 +0.1 2,287,988 + MPMX26_02228 0.36 +0.1 2,287,988 + MPMX26_02228 0.36 -0.2 2,287,988 + MPMX26_02228 0.36 +0.1 2,288,001 + MPMX26_02228 0.38 +0.3 2,288,106 + MPMX26_02228 0.59 +0.3 2,288,111 + MPMX26_02228 0.60 +0.7 2,288,111 + MPMX26_02228 0.60 -0.4 2,288,118 + MPMX26_02228 0.62 -0.5 2,288,149 + MPMX26_02228 0.68 +0.4 2,288,158 + MPMX26_02228 0.70 -0.3 2,288,159 + MPMX26_02228 0.70 +0.0 2,288,178 + MPMX26_02228 0.74 +0.2 2,288,178 + MPMX26_02228 0.74 +0.4 2,288,178 + MPMX26_02228 0.74 -0.2 2,288,292 + -0.3 2,288,672 - MPMX26_02229 0.11 +0.4 2,288,696 - MPMX26_02229 0.18 -0.7 2,288,717 - MPMX26_02229 0.23 +0.5 2,288,719 - MPMX26_02229 0.24 -0.2 2,288,746 - MPMX26_02229 0.31 +0.7 2,288,807 - MPMX26_02229 0.48 +0.1 2,288,816 - MPMX26_02229 0.50 -0.0 2,288,821 - MPMX26_02229 0.51 +0.1 2,288,837 - MPMX26_02229 0.56 -0.2 2,288,864 - MPMX26_02229 0.63 +0.4 2,288,869 - MPMX26_02229 0.64 +0.2 2,288,869 - MPMX26_02229 0.64 +0.6 2,288,869 - MPMX26_02229 0.64 -0.6 2,288,869 - MPMX26_02229 0.64 +0.3 2,288,869 - MPMX26_02229 0.64 +0.5 2,289,204 - -0.7
Or see this region's nucleotide sequence