Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01609

Experiment: TSB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01607 and MPMX26_01608 are separated by 114 nucleotidesMPMX26_01608 and MPMX26_01609 overlap by 4 nucleotidesMPMX26_01609 and MPMX26_01610 overlap by 4 nucleotidesMPMX26_01610 and MPMX26_01611 overlap by 4 nucleotides MPMX26_01607: MPMX26_01607 - HTH-type transcriptional regulator GltC, at 1,671,732 to 1,672,631 _01607 MPMX26_01608: MPMX26_01608 - Holin-like protein CidA, at 1,672,746 to 1,673,168 _01608 MPMX26_01609: MPMX26_01609 - Holin-like protein CidB, at 1,673,165 to 1,673,866 _01609 MPMX26_01610: MPMX26_01610 - Adenosylcobinamide-GDP ribazoletransferase, at 1,673,863 to 1,674,615 _01610 MPMX26_01611: MPMX26_01611 - Putative phosphoserine phosphatase 2, at 1,674,612 to 1,675,220 _01611 Position (kb) 1673 1674Strain fitness (log2 ratio) -1 0 1at 1672.618 kb on + strandat 1673.694 kb on - strand, within MPMX26_01609

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB
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1,672,618 + -0.3
1,673,694 - MPMX26_01609 0.75 +0.5

Or see this region's nucleotide sequence