Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01299

Experiment: TSB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01297 and MPMX26_01298 are separated by 3 nucleotidesMPMX26_01298 and MPMX26_01299 are separated by 0 nucleotidesMPMX26_01299 and MPMX26_01300 overlap by 1 nucleotides MPMX26_01297: MPMX26_01297 - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific), at 1,373,149 to 1,373,898 _01297 MPMX26_01298: MPMX26_01298 - Phosphatidate cytidylyltransferase, at 1,373,902 to 1,374,726 _01298 MPMX26_01299: MPMX26_01299 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 1,374,727 to 1,375,923 _01299 MPMX26_01300: MPMX26_01300 - Regulator of sigma-E protease RseP, at 1,375,923 to 1,377,281 _01300 Position (kb) 1374 1375 1376Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1375.937 kb on + strandat 1375.953 kb on + strandat 1376.011 kb on + strandat 1376.056 kb on + strandat 1376.056 kb on + strandat 1376.056 kb on + strandat 1376.056 kb on + strandat 1376.056 kb on + strandat 1376.061 kb on + strand, within MPMX26_01300at 1376.061 kb on + strand, within MPMX26_01300at 1376.061 kb on + strand, within MPMX26_01300at 1376.105 kb on + strand, within MPMX26_01300at 1376.105 kb on + strand, within MPMX26_01300at 1376.105 kb on + strand, within MPMX26_01300at 1376.112 kb on + strand, within MPMX26_01300at 1376.144 kb on + strand, within MPMX26_01300at 1376.169 kb on + strand, within MPMX26_01300at 1376.205 kb on + strand, within MPMX26_01300at 1376.260 kb on + strand, within MPMX26_01300at 1376.270 kb on + strand, within MPMX26_01300at 1376.303 kb on + strand, within MPMX26_01300at 1376.342 kb on + strand, within MPMX26_01300at 1376.358 kb on + strand, within MPMX26_01300at 1376.390 kb on + strand, within MPMX26_01300at 1376.397 kb on + strand, within MPMX26_01300at 1376.397 kb on + strand, within MPMX26_01300at 1376.397 kb on + strand, within MPMX26_01300at 1376.399 kb on + strand, within MPMX26_01300at 1376.430 kb on + strand, within MPMX26_01300at 1376.430 kb on + strand, within MPMX26_01300at 1376.430 kb on + strand, within MPMX26_01300at 1376.430 kb on + strand, within MPMX26_01300at 1376.435 kb on + strand, within MPMX26_01300at 1376.445 kb on + strand, within MPMX26_01300at 1376.582 kb on + strand, within MPMX26_01300at 1376.689 kb on + strand, within MPMX26_01300at 1376.745 kb on + strand, within MPMX26_01300at 1376.789 kb on + strand, within MPMX26_01300at 1376.820 kb on + strand, within MPMX26_01300at 1376.825 kb on + strand, within MPMX26_01300at 1376.832 kb on + strand, within MPMX26_01300at 1376.888 kb on + strand, within MPMX26_01300at 1376.888 kb on + strand, within MPMX26_01300at 1376.903 kb on + strand, within MPMX26_01300at 1376.904 kb on + strand, within MPMX26_01300at 1376.904 kb on + strand, within MPMX26_01300at 1376.904 kb on + strand, within MPMX26_01300at 1376.912 kb on + strand, within MPMX26_01300at 1376.921 kb on + strand, within MPMX26_01300at 1376.921 kb on + strand, within MPMX26_01300at 1376.921 kb on + strand, within MPMX26_01300

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB
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1,375,937 + -0.4
1,375,953 + -1.2
1,376,011 + -2.9
1,376,056 + -0.6
1,376,056 + -0.6
1,376,056 + -1.8
1,376,056 + -1.1
1,376,056 + -1.5
1,376,061 + MPMX26_01300 0.10 -2.6
1,376,061 + MPMX26_01300 0.10 -1.0
1,376,061 + MPMX26_01300 0.10 -1.0
1,376,105 + MPMX26_01300 0.13 -1.7
1,376,105 + MPMX26_01300 0.13 -2.4
1,376,105 + MPMX26_01300 0.13 -2.5
1,376,112 + MPMX26_01300 0.14 -1.8
1,376,144 + MPMX26_01300 0.16 -1.0
1,376,169 + MPMX26_01300 0.18 -2.2
1,376,205 + MPMX26_01300 0.21 -3.8
1,376,260 + MPMX26_01300 0.25 -2.4
1,376,270 + MPMX26_01300 0.26 -3.0
1,376,303 + MPMX26_01300 0.28 -1.9
1,376,342 + MPMX26_01300 0.31 -1.3
1,376,358 + MPMX26_01300 0.32 -3.3
1,376,390 + MPMX26_01300 0.34 -1.3
1,376,397 + MPMX26_01300 0.35 -1.6
1,376,397 + MPMX26_01300 0.35 -0.3
1,376,397 + MPMX26_01300 0.35 -1.4
1,376,399 + MPMX26_01300 0.35 -3.8
1,376,430 + MPMX26_01300 0.37 -1.0
1,376,430 + MPMX26_01300 0.37 -4.1
1,376,430 + MPMX26_01300 0.37 -1.5
1,376,430 + MPMX26_01300 0.37 -1.6
1,376,435 + MPMX26_01300 0.38 -1.9
1,376,445 + MPMX26_01300 0.38 -2.8
1,376,582 + MPMX26_01300 0.48 -0.8
1,376,689 + MPMX26_01300 0.56 -2.2
1,376,745 + MPMX26_01300 0.60 -2.2
1,376,789 + MPMX26_01300 0.64 -2.4
1,376,820 + MPMX26_01300 0.66 -2.0
1,376,825 + MPMX26_01300 0.66 -2.2
1,376,832 + MPMX26_01300 0.67 -2.8
1,376,888 + MPMX26_01300 0.71 -1.3
1,376,888 + MPMX26_01300 0.71 -1.7
1,376,903 + MPMX26_01300 0.72 -2.4
1,376,904 + MPMX26_01300 0.72 -1.8
1,376,904 + MPMX26_01300 0.72 -3.4
1,376,904 + MPMX26_01300 0.72 -3.2
1,376,912 + MPMX26_01300 0.73 -2.3
1,376,921 + MPMX26_01300 0.73 -1.8
1,376,921 + MPMX26_01300 0.73 -2.9
1,376,921 + MPMX26_01300 0.73 -1.3

Or see this region's nucleotide sequence