Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00726

Experiment: TSB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00724 and MPMX26_00725 are separated by 36 nucleotidesMPMX26_00725 and MPMX26_00726 are separated by 91 nucleotidesMPMX26_00726 and MPMX26_00727 are separated by 20 nucleotidesMPMX26_00727 and MPMX26_00728 are separated by 27 nucleotidesMPMX26_00728 and MPMX26_00729 are separated by 1 nucleotides MPMX26_00724: MPMX26_00724 - Ribose-phosphate pyrophosphokinase, at 765,187 to 766,140 _00724 MPMX26_00725: MPMX26_00725 - tRNA-Gln, at 766,177 to 766,251 _00725 MPMX26_00726: MPMX26_00726 - tRNA-Gln, at 766,343 to 766,417 _00726 MPMX26_00727: MPMX26_00727 - tRNA-Gln, at 766,438 to 766,512 _00727 MPMX26_00728: MPMX26_00728 - tRNA-Gln, at 766,540 to 766,614 _00728 MPMX26_00729: MPMX26_00729 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 766,616 to 767,446 _00729 Position (kb) 766 767Strain fitness (log2 ratio) -3 -2 -1 0 1at 766.367 kb on - strand, within MPMX26_00726at 766.388 kb on - strand, within MPMX26_00726at 766.389 kb on - strand, within MPMX26_00726at 766.402 kb on - strand, within MPMX26_00726at 766.402 kb on - strand, within MPMX26_00726at 766.403 kb on - strand, within MPMX26_00726at 766.403 kb on - strand, within MPMX26_00726at 766.403 kb on - strand, within MPMX26_00726at 766.446 kb on - strand, within MPMX26_00727at 766.467 kb on - strand, within MPMX26_00727

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB
remove
766,367 - MPMX26_00726 0.32 +0.1
766,388 - MPMX26_00726 0.60 -0.1
766,389 - MPMX26_00726 0.61 -0.1
766,402 - MPMX26_00726 0.79 -3.4
766,402 - MPMX26_00726 0.79 -1.8
766,403 - MPMX26_00726 0.80 +0.1
766,403 - MPMX26_00726 0.80 -1.2
766,403 - MPMX26_00726 0.80 -1.0
766,446 - MPMX26_00727 0.11 +0.1
766,467 - MPMX26_00727 0.39 -2.0

Or see this region's nucleotide sequence