Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF907 and GFF908 are separated by 63 nucleotides GFF908 and GFF909 are separated by 224 nucleotides GFF909 and GFF910 are separated by 28 nucleotides
GFF907 - 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58), at 636,731 to 638,368
GFF907
GFF908 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 638,432 to 638,992
GFF908
GFF909 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 639,217 to 641,184
GFF909
GFF910 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 641,213 to 642,190
GFF910
Position (kb) 639
640
641
642 Strain fitness (log2 ratio) -1
0
1 at 638.334 kb on + strand at 638.569 kb on + strand, within GFF908 at 638.599 kb on - strand, within GFF908 at 638.755 kb on - strand, within GFF908 at 638.818 kb on - strand, within GFF908 at 638.853 kb on + strand, within GFF908 at 638.854 kb on - strand, within GFF908 at 638.973 kb on + strand at 638.973 kb on + strand at 638.973 kb on + strand at 638.973 kb on + strand at 638.974 kb on - strand at 638.974 kb on - strand at 638.974 kb on - strand at 639.065 kb on + strand at 639.066 kb on - strand at 639.140 kb on + strand at 639.141 kb on - strand at 639.141 kb on - strand at 639.147 kb on - strand at 639.397 kb on + strand at 639.407 kb on - strand at 639.661 kb on + strand, within GFF909 at 639.662 kb on - strand, within GFF909 at 639.662 kb on - strand, within GFF909 at 640.028 kb on + strand, within GFF909 at 640.036 kb on + strand, within GFF909 at 640.037 kb on - strand, within GFF909 at 640.037 kb on - strand, within GFF909 at 640.213 kb on + strand, within GFF909 at 640.213 kb on + strand, within GFF909 at 640.214 kb on - strand, within GFF909 at 640.307 kb on - strand, within GFF909 at 640.697 kb on - strand, within GFF909 at 640.709 kb on - strand, within GFF909 at 641.182 kb on + strand at 641.239 kb on + strand at 641.239 kb on + strand at 641.240 kb on - strand at 641.263 kb on + strand at 641.349 kb on + strand, within GFF910 at 641.349 kb on + strand, within GFF910 at 641.842 kb on - strand, within GFF910 at 641.902 kb on + strand, within GFF910 at 641.985 kb on + strand, within GFF910 at 642.059 kb on + strand, within GFF910 at 642.060 kb on - strand, within GFF910 at 642.060 kb on - strand, within GFF910 at 642.167 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 638,334 + +0.2 638,569 + GFF908 0.24 -0.4 638,599 - GFF908 0.30 -0.1 638,755 - GFF908 0.58 -1.3 638,818 - GFF908 0.69 -0.4 638,853 + GFF908 0.75 -0.2 638,854 - GFF908 0.75 -0.2 638,973 + +1.2 638,973 + -1.1 638,973 + -0.4 638,973 + -0.4 638,974 - -0.1 638,974 - -0.5 638,974 - -0.5 639,065 + -0.6 639,066 - -0.1 639,140 + -0.7 639,141 - +0.1 639,141 - -0.1 639,147 - -1.3 639,397 + -0.2 639,407 - -0.1 639,661 + GFF909 0.23 -0.9 639,662 - GFF909 0.23 +0.3 639,662 - GFF909 0.23 +0.1 640,028 + GFF909 0.41 +0.4 640,036 + GFF909 0.42 -0.4 640,037 - GFF909 0.42 -0.2 640,037 - GFF909 0.42 +0.5 640,213 + GFF909 0.51 -0.3 640,213 + GFF909 0.51 +0.1 640,214 - GFF909 0.51 -0.0 640,307 - GFF909 0.55 -0.5 640,697 - GFF909 0.75 -1.0 640,709 - GFF909 0.76 -1.2 641,182 + -0.7 641,239 + +0.4 641,239 + +0.3 641,240 - -0.5 641,263 + -0.2 641,349 + GFF910 0.14 -0.4 641,349 + GFF910 0.14 +0.0 641,842 - GFF910 0.64 -1.7 641,902 + GFF910 0.70 -0.9 641,985 + GFF910 0.79 +0.5 642,059 + GFF910 0.87 +0.0 642,060 - GFF910 0.87 -0.3 642,060 - GFF910 0.87 -0.5 642,167 - -0.2
Or see this region's nucleotide sequence