Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF886 and GFF887 are separated by 11 nucleotides GFF887 and GFF888 overlap by 20 nucleotides
GFF886 - Probable acyl-CoA dehydrogenase (EC 1.3.99.3), at 613,175 to 614,329
GFF886
GFF887 - L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16), at 614,341 to 615,519
GFF887
GFF888 - MmgE/PrpD family protein, at 615,500 to 616,900
GFF888
Position (kb) 614
615
616 Strain fitness (log2 ratio) -1
0
1 at 613.436 kb on + strand, within GFF886 at 613.436 kb on + strand, within GFF886 at 613.436 kb on + strand, within GFF886 at 613.436 kb on + strand, within GFF886 at 613.436 kb on + strand, within GFF886 at 613.436 kb on + strand, within GFF886 at 613.437 kb on - strand, within GFF886 at 613.437 kb on - strand, within GFF886 at 613.437 kb on - strand, within GFF886 at 613.437 kb on - strand, within GFF886 at 613.437 kb on - strand, within GFF886 at 613.437 kb on - strand, within GFF886 at 613.487 kb on + strand, within GFF886 at 613.488 kb on - strand, within GFF886 at 613.605 kb on - strand, within GFF886 at 613.727 kb on - strand, within GFF886 at 613.875 kb on - strand, within GFF886 at 613.875 kb on - strand, within GFF886 at 614.135 kb on + strand, within GFF886 at 614.136 kb on - strand, within GFF886 at 614.136 kb on - strand, within GFF886 at 614.213 kb on + strand, within GFF886 at 614.214 kb on - strand at 614.249 kb on + strand at 614.250 kb on - strand at 614.288 kb on + strand at 614.288 kb on + strand at 614.289 kb on - strand at 614.480 kb on - strand, within GFF887 at 614.580 kb on - strand, within GFF887 at 614.731 kb on + strand, within GFF887 at 614.731 kb on + strand, within GFF887 at 614.732 kb on - strand, within GFF887 at 614.749 kb on + strand, within GFF887 at 614.749 kb on + strand, within GFF887 at 614.750 kb on - strand, within GFF887 at 614.750 kb on - strand, within GFF887 at 614.854 kb on + strand, within GFF887 at 614.854 kb on + strand, within GFF887 at 614.854 kb on + strand, within GFF887 at 614.855 kb on - strand, within GFF887 at 614.855 kb on - strand, within GFF887 at 614.855 kb on - strand, within GFF887 at 614.855 kb on - strand, within GFF887 at 614.860 kb on + strand, within GFF887 at 614.861 kb on - strand, within GFF887 at 614.861 kb on - strand, within GFF887 at 614.969 kb on - strand, within GFF887 at 614.971 kb on + strand, within GFF887 at 614.971 kb on + strand, within GFF887 at 615.026 kb on + strand, within GFF887 at 615.026 kb on + strand, within GFF887 at 615.027 kb on - strand, within GFF887 at 615.027 kb on - strand, within GFF887 at 615.028 kb on + strand, within GFF887 at 615.028 kb on + strand, within GFF887 at 615.028 kb on + strand, within GFF887 at 615.028 kb on + strand, within GFF887 at 615.028 kb on + strand, within GFF887 at 615.029 kb on - strand, within GFF887 at 615.029 kb on - strand, within GFF887 at 615.148 kb on + strand, within GFF887 at 615.149 kb on - strand, within GFF887 at 615.149 kb on - strand, within GFF887 at 615.149 kb on - strand, within GFF887 at 615.547 kb on + strand at 615.651 kb on - strand, within GFF888 at 615.942 kb on - strand, within GFF888 at 615.986 kb on + strand, within GFF888 at 616.196 kb on + strand, within GFF888 at 616.196 kb on + strand, within GFF888 at 616.197 kb on - strand, within GFF888 at 616.197 kb on - strand, within GFF888
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 613,436 + GFF886 0.23 +1.0 613,436 + GFF886 0.23 -1.3 613,436 + GFF886 0.23 +0.3 613,436 + GFF886 0.23 -0.3 613,436 + GFF886 0.23 +0.3 613,436 + GFF886 0.23 +0.5 613,437 - GFF886 0.23 +1.0 613,437 - GFF886 0.23 -0.1 613,437 - GFF886 0.23 -0.3 613,437 - GFF886 0.23 -0.6 613,437 - GFF886 0.23 -0.8 613,437 - GFF886 0.23 -0.2 613,487 + GFF886 0.27 -1.3 613,488 - GFF886 0.27 +0.9 613,605 - GFF886 0.37 -0.3 613,727 - GFF886 0.48 +0.3 613,875 - GFF886 0.61 +1.1 613,875 - GFF886 0.61 +0.4 614,135 + GFF886 0.83 +0.5 614,136 - GFF886 0.83 -0.4 614,136 - GFF886 0.83 -0.7 614,213 + GFF886 0.90 +0.1 614,214 - -0.6 614,249 + -0.5 614,250 - +0.3 614,288 + +0.1 614,288 + -0.1 614,289 - -1.0 614,480 - GFF887 0.12 -0.3 614,580 - GFF887 0.20 -0.0 614,731 + GFF887 0.33 -0.3 614,731 + GFF887 0.33 -0.5 614,732 - GFF887 0.33 -0.1 614,749 + GFF887 0.35 -0.5 614,749 + GFF887 0.35 +1.2 614,750 - GFF887 0.35 +0.1 614,750 - GFF887 0.35 -0.2 614,854 + GFF887 0.44 +0.1 614,854 + GFF887 0.44 +0.1 614,854 + GFF887 0.44 +0.5 614,855 - GFF887 0.44 -0.2 614,855 - GFF887 0.44 +0.2 614,855 - GFF887 0.44 -0.1 614,855 - GFF887 0.44 +0.8 614,860 + GFF887 0.44 -0.4 614,861 - GFF887 0.44 -0.3 614,861 - GFF887 0.44 -0.2 614,969 - GFF887 0.53 -0.1 614,971 + GFF887 0.53 -0.1 614,971 + GFF887 0.53 -0.3 615,026 + GFF887 0.58 +1.3 615,026 + GFF887 0.58 -0.0 615,027 - GFF887 0.58 -1.1 615,027 - GFF887 0.58 +1.5 615,028 + GFF887 0.58 -0.8 615,028 + GFF887 0.58 -0.4 615,028 + GFF887 0.58 +0.5 615,028 + GFF887 0.58 -0.1 615,028 + GFF887 0.58 -0.7 615,029 - GFF887 0.58 -0.3 615,029 - GFF887 0.58 -0.3 615,148 + GFF887 0.68 -0.1 615,149 - GFF887 0.69 +1.5 615,149 - GFF887 0.69 -0.5 615,149 - GFF887 0.69 -0.1 615,547 + -0.7 615,651 - GFF888 0.11 +0.9 615,942 - GFF888 0.32 -0.3 615,986 + GFF888 0.35 -0.4 616,196 + GFF888 0.50 +0.1 616,196 + GFF888 0.50 +0.1 616,197 - GFF888 0.50 -0.2 616,197 - GFF888 0.50 -0.1
Or see this region's nucleotide sequence