Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF645 and GFF646 are separated by 36 nucleotides GFF646 and GFF647 are separated by 3 nucleotides
GFF645 - twitching motility protein PilJ, at 320,465 to 322,711
GFF645
GFF646 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 322,748 to 328,672
GFF646
GFF647 - Deoxyribodipyrimidine photolyase (EC 4.1.99.3), at 328,676 to 330,175
GFF647
Position (kb) 322
323
324
325
326
327
328
329 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 321.842 kb on + strand, within GFF645 at 321.843 kb on - strand, within GFF645 at 321.843 kb on - strand, within GFF645 at 321.843 kb on - strand, within GFF645 at 322.471 kb on + strand, within GFF645 at 323.120 kb on + strand at 323.121 kb on - strand at 323.450 kb on + strand, within GFF646 at 323.450 kb on + strand, within GFF646 at 323.450 kb on + strand, within GFF646 at 323.451 kb on - strand, within GFF646 at 323.451 kb on - strand, within GFF646 at 323.451 kb on - strand, within GFF646 at 323.688 kb on - strand, within GFF646 at 323.712 kb on - strand, within GFF646 at 323.777 kb on + strand, within GFF646 at 323.777 kb on + strand, within GFF646 at 323.969 kb on + strand, within GFF646 at 323.969 kb on + strand, within GFF646 at 323.969 kb on + strand, within GFF646 at 323.970 kb on - strand, within GFF646 at 323.970 kb on - strand, within GFF646 at 323.970 kb on - strand, within GFF646 at 324.440 kb on + strand, within GFF646 at 324.440 kb on + strand, within GFF646 at 324.440 kb on + strand, within GFF646 at 324.440 kb on + strand, within GFF646 at 324.441 kb on - strand, within GFF646 at 324.441 kb on - strand, within GFF646 at 324.441 kb on - strand, within GFF646 at 324.441 kb on - strand, within GFF646 at 324.441 kb on - strand, within GFF646 at 324.441 kb on - strand, within GFF646 at 325.205 kb on + strand, within GFF646 at 325.205 kb on + strand, within GFF646 at 325.206 kb on - strand, within GFF646 at 325.745 kb on + strand, within GFF646 at 325.746 kb on - strand, within GFF646 at 325.754 kb on + strand, within GFF646 at 325.755 kb on + strand, within GFF646 at 325.755 kb on + strand, within GFF646 at 325.755 kb on - strand, within GFF646 at 326.090 kb on + strand, within GFF646 at 327.060 kb on + strand, within GFF646 at 327.335 kb on + strand, within GFF646 at 327.939 kb on - strand, within GFF646 at 327.939 kb on - strand, within GFF646 at 328.163 kb on + strand at 328.164 kb on - strand at 328.164 kb on - strand at 328.595 kb on + strand at 328.595 kb on + strand at 328.596 kb on - strand at 328.647 kb on - strand at 328.647 kb on - strand at 328.713 kb on + strand at 329.229 kb on + strand, within GFF647 at 329.229 kb on + strand, within GFF647 at 329.230 kb on - strand, within GFF647 at 329.230 kb on - strand, within GFF647 at 329.287 kb on - strand, within GFF647 at 329.415 kb on + strand, within GFF647 at 329.416 kb on - strand, within GFF647 at 329.458 kb on - strand, within GFF647 at 329.458 kb on - strand, within GFF647 at 329.527 kb on + strand, within GFF647 at 329.620 kb on - strand, within GFF647
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 321,842 + GFF645 0.61 +0.6 321,843 - GFF645 0.61 +0.3 321,843 - GFF645 0.61 +0.8 321,843 - GFF645 0.61 +0.7 322,471 + GFF645 0.89 -0.0 323,120 + +0.9 323,121 - +0.3 323,450 + GFF646 0.12 +0.2 323,450 + GFF646 0.12 -0.6 323,450 + GFF646 0.12 +0.4 323,451 - GFF646 0.12 +0.3 323,451 - GFF646 0.12 +0.8 323,451 - GFF646 0.12 +0.7 323,688 - GFF646 0.16 +0.6 323,712 - GFF646 0.16 +0.1 323,777 + GFF646 0.17 +0.5 323,777 + GFF646 0.17 +0.0 323,969 + GFF646 0.21 -0.0 323,969 + GFF646 0.21 -0.4 323,969 + GFF646 0.21 -0.1 323,970 - GFF646 0.21 -0.1 323,970 - GFF646 0.21 -0.1 323,970 - GFF646 0.21 -0.6 324,440 + GFF646 0.29 +0.1 324,440 + GFF646 0.29 +3.8 324,440 + GFF646 0.29 -0.0 324,440 + GFF646 0.29 +1.9 324,441 - GFF646 0.29 -0.8 324,441 - GFF646 0.29 -0.1 324,441 - GFF646 0.29 +1.5 324,441 - GFF646 0.29 +0.5 324,441 - GFF646 0.29 +0.3 324,441 - GFF646 0.29 +0.0 325,205 + GFF646 0.41 +0.0 325,205 + GFF646 0.41 +0.6 325,206 - GFF646 0.41 +0.1 325,745 + GFF646 0.51 +0.6 325,746 - GFF646 0.51 +0.9 325,754 + GFF646 0.51 +0.8 325,755 + GFF646 0.51 -0.6 325,755 + GFF646 0.51 -0.4 325,755 - GFF646 0.51 -1.5 326,090 + GFF646 0.56 -0.1 327,060 + GFF646 0.73 +0.7 327,335 + GFF646 0.77 +0.8 327,939 - GFF646 0.88 +0.2 327,939 - GFF646 0.88 +1.5 328,163 + -0.2 328,164 - +0.1 328,164 - -0.3 328,595 + -0.4 328,595 + +1.5 328,596 - +0.3 328,647 - -0.1 328,647 - -0.2 328,713 + -1.1 329,229 + GFF647 0.37 +0.2 329,229 + GFF647 0.37 +0.2 329,230 - GFF647 0.37 -0.2 329,230 - GFF647 0.37 +0.7 329,287 - GFF647 0.41 -0.1 329,415 + GFF647 0.49 -0.5 329,416 - GFF647 0.49 -0.4 329,458 - GFF647 0.52 +1.3 329,458 - GFF647 0.52 +0.2 329,527 + GFF647 0.57 -0.1 329,620 - GFF647 0.63 +0.1
Or see this region's nucleotide sequence