Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF580 and GFF581 are separated by 216 nucleotides GFF581 and GFF582 are separated by 82 nucleotides GFF582 and GFF583 are separated by 3 nucleotides
GFF580 - TldD protein, part of TldE/TldD proteolytic complex, at 251,964 to 253,424
GFF580
GFF581 - 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54), at 253,641 to 254,768
GFF581
GFF582 - hypothetical protein, at 254,851 to 255,171
GFF582
GFF583 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-), at 255,175 to 256,560
GFF583
Position (kb) 253
254
255 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 252.654 kb on + strand, within GFF580 at 252.654 kb on + strand, within GFF580 at 252.654 kb on + strand, within GFF580 at 252.655 kb on - strand, within GFF580 at 252.655 kb on - strand, within GFF580 at 252.655 kb on - strand, within GFF580 at 252.675 kb on + strand, within GFF580 at 252.676 kb on - strand, within GFF580 at 252.676 kb on - strand, within GFF580 at 252.676 kb on - strand, within GFF580 at 252.972 kb on + strand, within GFF580 at 253.042 kb on - strand, within GFF580 at 253.042 kb on - strand, within GFF580 at 253.042 kb on - strand, within GFF580 at 253.042 kb on - strand, within GFF580 at 253.042 kb on - strand, within GFF580 at 253.042 kb on - strand, within GFF580 at 253.077 kb on + strand, within GFF580 at 253.077 kb on + strand, within GFF580 at 253.077 kb on + strand, within GFF580 at 253.077 kb on + strand, within GFF580 at 253.077 kb on + strand, within GFF580 at 253.077 kb on + strand, within GFF580 at 253.078 kb on - strand, within GFF580 at 253.078 kb on - strand, within GFF580 at 253.078 kb on - strand, within GFF580 at 253.078 kb on - strand, within GFF580 at 253.078 kb on - strand, within GFF580 at 253.078 kb on - strand, within GFF580 at 253.209 kb on + strand, within GFF580 at 253.210 kb on - strand, within GFF580 at 253.210 kb on - strand, within GFF580 at 253.434 kb on + strand at 253.448 kb on + strand at 253.449 kb on - strand at 253.492 kb on + strand at 253.493 kb on - strand at 253.493 kb on - strand at 253.493 kb on - strand at 253.493 kb on - strand at 253.493 kb on - strand at 253.493 kb on - strand at 253.534 kb on + strand at 253.534 kb on + strand at 253.535 kb on - strand at 253.535 kb on - strand at 253.535 kb on - strand at 253.535 kb on - strand at 253.914 kb on + strand, within GFF581 at 253.914 kb on + strand, within GFF581 at 253.947 kb on + strand, within GFF581 at 253.947 kb on + strand, within GFF581 at 253.947 kb on + strand, within GFF581 at 253.947 kb on + strand, within GFF581 at 253.947 kb on + strand, within GFF581 at 253.948 kb on - strand, within GFF581 at 253.948 kb on - strand, within GFF581 at 253.948 kb on - strand, within GFF581 at 253.956 kb on - strand, within GFF581 at 253.980 kb on + strand, within GFF581 at 253.980 kb on + strand, within GFF581 at 253.981 kb on - strand, within GFF581 at 254.049 kb on + strand, within GFF581 at 254.154 kb on + strand, within GFF581 at 254.154 kb on + strand, within GFF581 at 254.154 kb on + strand, within GFF581 at 254.155 kb on - strand, within GFF581 at 254.421 kb on + strand, within GFF581 at 254.422 kb on - strand, within GFF581 at 254.670 kb on + strand at 254.670 kb on + strand at 254.670 kb on + strand at 254.671 kb on - strand at 254.671 kb on - strand at 254.893 kb on + strand, within GFF582 at 254.893 kb on + strand, within GFF582 at 255.166 kb on + strand at 255.551 kb on + strand, within GFF583
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 252,654 + GFF580 0.47 -0.1 252,654 + GFF580 0.47 +0.2 252,654 + GFF580 0.47 -0.4 252,655 - GFF580 0.47 -2.0 252,655 - GFF580 0.47 -0.3 252,655 - GFF580 0.47 -0.5 252,675 + GFF580 0.49 +0.2 252,676 - GFF580 0.49 -0.9 252,676 - GFF580 0.49 +0.2 252,676 - GFF580 0.49 -1.1 252,972 + GFF580 0.69 +0.2 253,042 - GFF580 0.74 -0.1 253,042 - GFF580 0.74 -1.1 253,042 - GFF580 0.74 -0.6 253,042 - GFF580 0.74 +0.3 253,042 - GFF580 0.74 -0.5 253,042 - GFF580 0.74 -0.4 253,077 + GFF580 0.76 -1.2 253,077 + GFF580 0.76 -0.9 253,077 + GFF580 0.76 -0.1 253,077 + GFF580 0.76 +0.5 253,077 + GFF580 0.76 -0.2 253,077 + GFF580 0.76 +0.3 253,078 - GFF580 0.76 -0.7 253,078 - GFF580 0.76 -0.7 253,078 - GFF580 0.76 -1.6 253,078 - GFF580 0.76 -2.3 253,078 - GFF580 0.76 -0.3 253,078 - GFF580 0.76 -0.5 253,209 + GFF580 0.85 +0.8 253,210 - GFF580 0.85 -0.1 253,210 - GFF580 0.85 -0.7 253,434 + +0.1 253,448 + +0.6 253,449 - +0.2 253,492 + +0.1 253,493 - -0.7 253,493 - +0.8 253,493 - -0.4 253,493 - -0.5 253,493 - -0.1 253,493 - +0.3 253,534 + -0.6 253,534 + +0.3 253,535 - -2.2 253,535 - -1.8 253,535 - -1.5 253,535 - -2.0 253,914 + GFF581 0.24 -3.0 253,914 + GFF581 0.24 -1.7 253,947 + GFF581 0.27 -0.8 253,947 + GFF581 0.27 -2.0 253,947 + GFF581 0.27 -2.8 253,947 + GFF581 0.27 -0.4 253,947 + GFF581 0.27 -0.7 253,948 - GFF581 0.27 -0.5 253,948 - GFF581 0.27 +0.2 253,948 - GFF581 0.27 -0.8 253,956 - GFF581 0.28 +0.4 253,980 + GFF581 0.30 -2.2 253,980 + GFF581 0.30 -1.2 253,981 - GFF581 0.30 -0.8 254,049 + GFF581 0.36 -2.7 254,154 + GFF581 0.45 -3.3 254,154 + GFF581 0.45 -3.3 254,154 + GFF581 0.45 -1.3 254,155 - GFF581 0.46 -0.9 254,421 + GFF581 0.69 -0.9 254,422 - GFF581 0.69 -1.9 254,670 + -1.8 254,670 + -0.9 254,670 + -1.7 254,671 - -2.4 254,671 - -1.2 254,893 + GFF582 0.13 +0.3 254,893 + GFF582 0.13 +0.1 255,166 + -0.1 255,551 + GFF583 0.27 +0.5
Or see this region's nucleotide sequence