Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5392

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
2,396,289	+				+0.3
2,396,289	+				-0.1
2,396,290	-				-1.2
2,396,290	-				+0.3
2,396,290	-				+0.1
2,396,290	-				+0.2
2,396,290	-				-0.2
2,396,290	-				+0.4
2,396,315	-				-0.1
2,396,333	+				-0.2
2,396,333	+				+0.7
2,396,334	-				-1.7
2,396,334	-				+0.5
2,396,388	-				-0.2
2,396,435	+				+0.1
2,396,435	+				+1.0
2,396,436	-				+1.5
2,396,436	-				+1.1
2,396,658	-		GFF5391	0.43	+0.2
2,396,658	-		GFF5391	0.43	+0.5
2,396,818	+		GFF5391	0.69	+0.8
2,396,818	+		GFF5391	0.69	+1.4
2,396,819	-		GFF5391	0.69	-0.3
2,396,819	-		GFF5391	0.69	+0.3
2,396,819	-		GFF5391	0.69	+0.7
2,396,819	-		GFF5391	0.69	-0.0
2,396,970	-				-0.0
2,397,044	+				+0.2
2,397,084	+				+0.3
2,397,132	+				+1.1
2,397,346	+		GFF5392	0.19	+0.5
2,397,346	+		GFF5392	0.19	+0.6
2,397,347	-		GFF5392	0.19	+0.3
2,397,347	-		GFF5392	0.19	+0.4
2,397,389	-		GFF5392	0.24	-0.2
2,397,415	+		GFF5392	0.27	+0.2
2,397,480	-		GFF5392	0.35	-0.3
2,397,480	-		GFF5392	0.35	+0.6
2,397,481	+		GFF5392	0.35	+0.4
2,397,481	+		GFF5392	0.35	+0.3
2,397,830	-		GFF5392	0.78	-0.4
2,398,048	-				+0.3
2,398,120	-				+1.5
2,398,120	-				+0.3
2,398,449	+				+1.3
2,398,449	+				+0.8
2,398,622	+		GFF5394	0.42	+0.2
2,398,640	+		GFF5394	0.47	+0.1
2,398,640	+		GFF5394	0.47	+1.0
2,398,670	+		GFF5394	0.55	-0.2
2,398,670	+		GFF5394	0.55	-0.5
2,398,671	-		GFF5394	0.55	-0.7
2,398,709	+		GFF5394	0.66	-0.3
2,398,969	+				-3.4