Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5239

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
2,254,040	-		GFF5238	0.40	-0.2
2,254,058	-		GFF5238	0.41	+0.1
2,254,058	-		GFF5238	0.41	-0.1
2,254,075	+		GFF5238	0.43	+0.7
2,254,075	+		GFF5238	0.43	-0.2
2,254,075	+		GFF5238	0.43	-0.2
2,254,075	+		GFF5238	0.43	-0.3
2,254,075	+		GFF5238	0.43	-0.7
2,254,075	+		GFF5238	0.43	-0.6
2,254,076	-		GFF5238	0.43	-0.5
2,254,076	-		GFF5238	0.43	-0.6
2,254,076	-		GFF5238	0.43	+0.3
2,254,076	-		GFF5238	0.43	-2.0
2,254,352	-		GFF5238	0.66	-0.4
2,254,579	+		GFF5238	0.86	-0.1
2,254,579	+		GFF5238	0.86	+0.7
2,254,579	+		GFF5238	0.86	+0.4
2,254,580	-		GFF5238	0.86	-0.1
2,254,580	-		GFF5238	0.86	-0.5
2,254,580	-		GFF5238	0.86	+0.1
2,254,673	-				+0.1
2,254,703	-				+0.1
2,255,263	+		GFF5239	0.40	-2.3
2,255,263	+		GFF5239	0.40	-3.1
2,255,264	-		GFF5239	0.40	-3.7
2,255,356	+		GFF5239	0.48	-2.5
2,255,356	+		GFF5239	0.48	-5.5
2,255,357	-		GFF5239	0.48	-1.3
2,255,357	-		GFF5239	0.48	-1.0
2,255,584	+		GFF5239	0.69	-2.1
2,255,584	+		GFF5239	0.69	-2.3
2,255,596	+		GFF5239	0.70	-2.8
2,255,597	-		GFF5239	0.70	-4.7
2,255,597	-		GFF5239	0.70	-2.4
2,255,602	+		GFF5239	0.70	-1.7
2,255,603	-		GFF5239	0.70	-3.8
2,255,603	-		GFF5239	0.70	-2.0
2,255,603	-		GFF5239	0.70	-3.4
2,255,644	+		GFF5239	0.74	-2.8
2,255,645	-		GFF5239	0.74	-2.0
2,255,645	-		GFF5239	0.74	-1.1
2,255,713	+		GFF5239	0.80	-4.7
2,255,714	-		GFF5239	0.81	-4.4
2,255,774	+		GFF5239	0.86	-5.1
2,255,928	-				-0.2
2,255,939	+				-1.2
2,255,940	-				+0.3
2,256,000	+				+0.3
2,256,126	+		GFF5240	0.13	-0.5
2,256,127	-		GFF5240	0.13	-0.7
2,256,127	-		GFF5240	0.13	-0.7
2,256,312	+		GFF5240	0.57	+0.1
2,256,312	+		GFF5240	0.57	-1.0
2,256,313	-		GFF5240	0.57	+0.0
2,256,408	+		GFF5240	0.79	+0.0
2,256,409	-		GFF5240	0.80	-0.4
2,256,409	-		GFF5240	0.80	+0.1
2,256,409	-		GFF5240	0.80	-0.7
2,256,409	-		GFF5240	0.80	+0.2
2,256,412	+		GFF5240	0.80	-0.2
2,256,412	+		GFF5240	0.80	-0.2
2,256,412	+		GFF5240	0.80	-0.5
2,256,413	-		GFF5240	0.81	-0.1
2,256,807	-				-0.4
2,256,877	+		GFF5241	0.15	-0.6
2,256,878	-		GFF5241	0.15	+0.1
2,256,910	+		GFF5241	0.20	+0.4
2,256,910	+		GFF5241	0.20	+0.2