Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4696

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
1,645,569	+				+0.1
1,645,570	-				+0.3
1,645,590	+				-0.6
1,645,590	+				-0.4
1,645,591	-				+0.0
1,645,591	-				-0.3
1,645,591	-				-0.4
1,646,165	+		GFF4695	0.59	+0.4
1,646,492	+				+0.4
1,646,492	+				-0.2
1,646,492	+				-0.4
1,646,492	+				-0.4
1,646,493	-				-0.4
1,646,493	-				-0.4
1,646,493	-				+0.1
1,646,571	+				+1.3
1,646,572	-				-0.4
1,646,682	+				-0.1
1,646,683	-				-0.1
1,646,718	+				-0.4
1,646,745	+				-0.3
1,646,745	+				-0.5
1,647,030	+		GFF4696	0.21	+1.1
1,647,031	-		GFF4696	0.21	+0.3
1,647,031	-		GFF4696	0.21	+0.0
1,647,031	-		GFF4696	0.21	-0.9
1,647,105	+		GFF4696	0.24	-0.3
1,647,105	+		GFF4696	0.24	-0.1
1,647,106	-		GFF4696	0.24	+0.3
1,647,106	-		GFF4696	0.24	-0.1
1,647,106	-		GFF4696	0.24	-0.3
1,647,106	-		GFF4696	0.24	+0.9
1,647,324	+		GFF4696	0.33	+0.1
1,647,436	-		GFF4696	0.37	+1.5
1,647,543	+		GFF4696	0.41	+1.0
1,647,543	+		GFF4696	0.41	-0.7
1,647,543	+		GFF4696	0.41	+1.2
1,647,544	-		GFF4696	0.42	+0.3
1,647,885	+		GFF4696	0.55	+1.6
1,647,921	+		GFF4696	0.57	-0.7
1,647,921	+		GFF4696	0.57	+1.0
1,647,921	+		GFF4696	0.57	-0.8
1,647,922	-		GFF4696	0.57	+0.2
1,647,952	+		GFF4696	0.58	-1.0
1,647,953	-		GFF4696	0.58	-0.1
1,648,074	+		GFF4696	0.63	-0.1
1,648,504	-		GFF4696	0.80	-0.9
1,648,608	+		GFF4696	0.84	+0.2
1,648,608	+		GFF4696	0.84	+0.4
1,648,698	+		GFF4696	0.87	-0.1
1,648,797	+				+1.2
1,648,938	+				+1.5
1,648,939	-				-0.1
1,648,939	-				+0.6
1,648,939	-				+0.4
1,649,032	+				+0.5
1,649,032	+				+0.8
1,649,033	-				+0.8
1,649,038	+				-0.9
1,649,039	-				-0.1
1,649,104	-				+2.7
1,649,286	+		GFF4697	0.19	-1.4
1,649,286	+		GFF4697	0.19	+0.4
1,649,286	+		GFF4697	0.19	+1.2
1,649,286	+		GFF4697	0.19	+0.3
1,649,286	+		GFF4697	0.19	+0.3
1,649,286	+		GFF4697	0.19	+0.4
1,649,286	+		GFF4697	0.19	+0.5
1,649,287	-		GFF4697	0.20	+0.7
1,649,287	-		GFF4697	0.20	-0.5
1,649,287	-		GFF4697	0.20	-0.8
1,649,310	+		GFF4697	0.22	+0.4
1,649,310	+		GFF4697	0.22	-0.1
1,649,310	+		GFF4697	0.22	-0.2
1,649,311	-		GFF4697	0.22	-0.0
1,649,311	-		GFF4697	0.22	-0.3
1,649,311	-		GFF4697	0.22	-0.2
1,649,311	-		GFF4697	0.22	+0.5
1,649,311	-		GFF4697	0.22	+0.2
1,649,311	-		GFF4697	0.22	+0.7