Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4668

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
1,616,811	+		GFF4666	0.59	+0.3
1,616,811	+		GFF4666	0.59	-0.2
1,616,812	-		GFF4666	0.59	-0.4
1,616,812	-		GFF4666	0.59	+0.5
1,616,812	-		GFF4666	0.59	+0.0
1,616,812	-		GFF4666	0.59	-1.5
1,616,812	-		GFF4666	0.59	-0.4
1,616,812	-		GFF4666	0.59	-0.5
1,616,812	-		GFF4666	0.59	-0.1
1,616,877	+		GFF4666	0.68	+0.3
1,616,877	+		GFF4666	0.68	-0.1
1,616,877	+		GFF4666	0.68	-0.2
1,616,877	+		GFF4666	0.68	-0.1
1,616,877	+		GFF4666	0.68	-0.2
1,616,877	+		GFF4666	0.68	-0.4
1,616,877	+		GFF4666	0.68	-0.8
1,616,877	+		GFF4666	0.68	-0.5
1,616,877	+		GFF4666	0.68	+0.5
1,616,878	-		GFF4666	0.68	-0.5
1,616,878	-		GFF4666	0.68	-0.2
1,616,878	-		GFF4666	0.68	-0.6
1,616,878	-		GFF4666	0.68	-0.1
1,616,878	-		GFF4666	0.68	-0.6
1,616,878	-		GFF4666	0.68	+0.6
1,617,054	-				-0.7
1,617,092	+				+1.1
1,617,092	+				-0.6
1,617,092	+				-0.5
1,617,092	+				-0.3
1,617,092	+				-2.6
1,617,092	+				-0.7
1,617,093	-				-0.3
1,617,093	-				-0.2
1,617,093	-				-1.5
1,617,093	-				-1.1
1,617,093	-				-0.3
1,617,093	-				-0.4
1,617,093	-				-1.1
1,617,147	+				-0.2
1,617,147	+				-0.5
1,617,147	+				-0.6
1,617,147	+				+0.8
1,617,147	+				-0.4
1,617,147	+				-0.9
1,617,147	+				-0.3
1,617,148	-				+0.0
1,617,148	-				-0.2
1,617,148	-				+0.0
1,617,148	-				-0.5
1,617,148	-				-1.1
1,617,148	-				-0.4
1,617,148	-				-0.8
1,617,148	-				-0.4
1,617,153	+				-0.2
1,617,153	+				-0.7
1,617,153	+				-0.3
1,617,153	+				+1.0
1,617,154	-				-0.2
1,617,154	-				-0.5
1,617,154	-				+0.8
1,617,154	-				-0.4
1,617,154	-				+0.5
1,617,154	-				-0.7
1,617,154	-				-0.2
1,617,314	+		GFF4667	0.19	-0.3
1,617,314	+		GFF4667	0.19	-0.0
1,617,343	+		GFF4667	0.25	-0.8
1,617,343	+		GFF4667	0.25	-0.3
1,617,344	-		GFF4667	0.25	-1.0
1,617,556	+		GFF4667	0.68	-0.8
1,617,556	+		GFF4667	0.68	-0.1
1,617,557	-		GFF4667	0.68	-1.1
1,617,557	-		GFF4667	0.68	-0.6
1,617,557	-		GFF4667	0.68	-0.7
1,617,580	+		GFF4667	0.73	-1.7
1,617,580	+		GFF4667	0.73	-0.5
1,617,646	+		GFF4667	0.87	-0.6
1,617,646	+		GFF4667	0.87	-1.3
1,617,646	+		GFF4667	0.87	-1.2
1,617,646	+		GFF4667	0.87	-0.5
1,617,647	-		GFF4667	0.87	-1.6
1,617,647	-		GFF4667	0.87	-0.6
1,617,647	-		GFF4667	0.87	+0.0
1,617,647	-		GFF4667	0.87	-0.5
1,617,647	-		GFF4667	0.87	-0.5
1,617,647	-		GFF4667	0.87	+0.3
1,617,661	+		GFF4667	0.90	-0.0
1,617,661	+		GFF4667	0.90	-1.2
1,617,662	-		GFF4667	0.90	+0.2
1,617,662	-		GFF4667	0.90	-0.3
1,617,662	-		GFF4667	0.90	-0.6
1,617,662	-		GFF4667	0.90	-1.1
1,617,662	-		GFF4667	0.90	-0.1
1,617,791	+				-0.9
1,617,791	+				-1.0
1,617,791	+				-1.3
1,617,791	+				-1.0
1,617,791	+				-0.6
1,617,792	-				-0.2
1,617,884	+		GFF4668	0.10	-1.5
1,617,884	+		GFF4668	0.10	-0.8
1,617,888	-		GFF4668	0.11	-1.9
1,617,929	+		GFF4668	0.13	-0.9
1,617,929	+		GFF4668	0.13	-2.1
1,617,929	+		GFF4668	0.13	-0.3
1,617,929	+		GFF4668	0.13	-0.6
1,617,929	+		GFF4668	0.13	-0.9
1,617,929	+		GFF4668	0.13	-0.7
1,617,929	+		GFF4668	0.13	-0.6
1,617,929	+		GFF4668	0.13	-0.7
1,617,929	+		GFF4668	0.13	-0.9
1,617,929	+		GFF4668	0.13	-0.2
1,617,929	+		GFF4668	0.13	-0.8
1,617,929	+		GFF4668	0.13	-2.0
1,617,929	+		GFF4668	0.13	-1.3
1,617,929	+		GFF4668	0.13	-0.2
1,617,929	+		GFF4668	0.13	-1.1
1,617,929	+		GFF4668	0.13	-1.0
1,617,929	+		GFF4668	0.13	-1.0
1,617,929	+		GFF4668	0.13	-1.0
1,617,930	-		GFF4668	0.13	+0.4
1,617,930	-		GFF4668	0.13	-0.4
1,617,930	-		GFF4668	0.13	-0.5
1,617,930	-		GFF4668	0.13	-1.7
1,617,930	-		GFF4668	0.13	-0.2
1,617,930	-		GFF4668	0.13	-0.9
1,617,930	-		GFF4668	0.13	-0.0
1,617,930	-		GFF4668	0.13	+0.1
1,617,930	-		GFF4668	0.13	-0.9
1,617,930	-		GFF4668	0.13	-1.9
1,617,930	-		GFF4668	0.13	-1.4
1,617,930	-		GFF4668	0.13	-1.1
1,617,930	-		GFF4668	0.13	-2.4
1,617,930	-		GFF4668	0.13	-1.2
1,617,930	-		GFF4668	0.13	-0.9
1,617,930	-		GFF4668	0.13	-1.1
1,617,930	-		GFF4668	0.13	+0.5
1,617,932	+		GFF4668	0.13	-0.4
1,617,932	+		GFF4668	0.13	-0.8
1,617,932	+		GFF4668	0.13	-1.6
1,617,932	+		GFF4668	0.13	+0.1
1,617,933	-		GFF4668	0.14	-0.4
1,617,933	-		GFF4668	0.14	-1.2
1,617,933	-		GFF4668	0.14	-1.2
1,617,933	-		GFF4668	0.14	-0.8
1,617,944	+		GFF4668	0.14	-1.5
1,617,944	+		GFF4668	0.14	-0.7
1,618,100	-		GFF4668	0.25	-0.4
1,618,100	-		GFF4668	0.25	-1.1
1,618,166	+		GFF4668	0.29	-0.4
1,618,166	+		GFF4668	0.29	-0.7
1,618,166	+		GFF4668	0.29	-0.7
1,618,166	+		GFF4668	0.29	-0.6
1,618,167	-		GFF4668	0.29	-0.9
1,618,167	-		GFF4668	0.29	-0.5
1,618,566	-		GFF4668	0.55	-1.1
1,618,898	+		GFF4668	0.77	-1.2
1,618,899	-		GFF4668	0.77	-0.5
1,618,946	+		GFF4668	0.81	-0.6
1,618,946	+		GFF4668	0.81	-0.2
1,618,946	+		GFF4668	0.81	-0.9
1,619,007	-		GFF4668	0.85	-1.3
1,619,007	-		GFF4668	0.85	-0.4
1,619,081	+		GFF4668	0.89	-0.5
1,619,081	+		GFF4668	0.89	-0.7
1,619,081	+		GFF4668	0.89	-0.7
1,619,081	+		GFF4668	0.89	-1.3
1,619,082	-		GFF4668	0.90	-1.0
1,619,082	-		GFF4668	0.90	-0.6
1,619,344	-				-0.0
1,619,344	-				+0.2
1,619,364	+				+0.4
1,619,364	+				+0.5
1,619,364	+				-0.8
1,619,364	+				-1.5
1,619,365	-				+0.5
1,619,414	+				+0.7
1,619,415	-				-0.7
1,619,841	+		GFF4669	0.55	-0.0
1,619,841	+		GFF4669	0.55	-1.3
1,619,841	+		GFF4669	0.55	+0.2
1,619,841	+		GFF4669	0.55	+0.3
1,619,841	+		GFF4669	0.55	-0.1
1,619,841	+		GFF4669	0.55	-0.8
1,619,841	+		GFF4669	0.55	-0.8
1,619,841	+		GFF4669	0.55	-0.1
1,619,842	-		GFF4669	0.56	-0.7
1,619,842	-		GFF4669	0.56	-0.3
1,619,842	-		GFF4669	0.56	+0.3
1,619,842	-		GFF4669	0.56	-1.1
1,619,842	-		GFF4669	0.56	-0.5
1,619,890	-		GFF4669	0.61	-0.5
1,619,979	+		GFF4669	0.72	-0.4
1,619,979	+		GFF4669	0.72	-0.6
1,619,979	+		GFF4669	0.72	-0.4
1,619,980	-		GFF4669	0.72	-1.4
1,619,980	-		GFF4669	0.72	-0.2
1,619,980	-		GFF4669	0.72	-0.5
1,620,189	+				-0.5
1,620,189	+				-0.0
1,620,190	-				-0.8