Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4576

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
1,517,424	+				-0.5
1,517,425	-				-0.5
1,517,425	-				+0.4
1,517,425	-				+1.2
1,517,425	-				+0.4
1,517,434	+				-0.3
1,517,434	+				+0.1
1,517,434	+				+0.3
1,517,476	-				+1.1
1,517,526	+		GFF4574	0.23	+1.2
1,517,526	+		GFF4574	0.23	-0.8
1,517,526	+		GFF4574	0.23	+0.4
1,517,526	+		GFF4574	0.23	+0.1
1,517,526	+		GFF4574	0.23	+0.2
1,517,526	+		GFF4574	0.23	+0.0
1,517,527	-		GFF4574	0.24	-0.3
1,517,527	-		GFF4574	0.24	-0.4
1,517,527	-		GFF4574	0.24	+1.2
1,517,527	-		GFF4574	0.24	-0.4
1,517,527	-		GFF4574	0.24	-0.1
1,517,527	-		GFF4574	0.24	+0.1
1,517,527	-		GFF4574	0.24	-0.8
1,517,604	+		GFF4574	0.51	+0.2
1,517,604	+		GFF4574	0.51	-1.8
1,517,605	-		GFF4574	0.52	-2.1
1,517,605	-		GFF4574	0.52	-0.8
1,518,304	+				-0.7
1,518,305	-				-0.4
1,518,305	-				+0.5
1,518,317	+				-0.4
1,518,317	+				-0.1
1,518,318	-				+0.3
1,518,318	-				-1.6
1,518,318	-				-0.9
1,518,896	+		GFF4576	0.49	-0.4
1,518,896	+		GFF4576	0.49	-1.1
1,518,896	+		GFF4576	0.49	-0.1
1,518,897	+		GFF4576	0.49	-0.8
1,518,897	-		GFF4576	0.49	+1.2
1,518,897	-		GFF4576	0.49	+0.9
1,518,898	-		GFF4576	0.50	-0.2
1,518,980	+		GFF4576	0.58	-0.1
1,518,980	+		GFF4576	0.58	-0.2
1,518,980	+		GFF4576	0.58	+1.2
1,518,980	+		GFF4576	0.58	-0.1
1,518,981	-		GFF4576	0.58	-0.4
1,519,070	+		GFF4576	0.68	+0.0
1,519,070	+		GFF4576	0.68	-0.1
1,519,187	+		GFF4576	0.80	-1.4
1,519,188	-		GFF4576	0.80	-0.2
1,519,188	-		GFF4576	0.80	-0.3
1,519,188	-		GFF4576	0.80	-0.2
1,519,214	+		GFF4576	0.82	+0.1
1,519,214	+		GFF4576	0.82	-0.3
1,519,217	+		GFF4576	0.83	-0.1
1,519,217	+		GFF4576	0.83	-0.8
1,519,218	-		GFF4576	0.83	+0.1
1,519,304	+				-0.2
1,519,305	-				+0.1
1,519,305	-				-0.1
1,519,677	+		GFF4577	0.29	-0.6
1,519,678	-		GFF4577	0.29	-0.3
1,519,678	-		GFF4577	0.29	+0.1
1,519,678	-		GFF4577	0.29	+0.5
1,519,678	-		GFF4577	0.29	-0.5
1,519,695	+		GFF4577	0.30	-0.3
1,519,695	+		GFF4577	0.30	-0.4
1,519,695	+		GFF4577	0.30	-0.7
1,519,696	-		GFF4577	0.30	+0.3
1,519,749	+		GFF4577	0.36	+0.6
1,519,750	-		GFF4577	0.36	+0.4
1,519,845	+		GFF4577	0.45	-0.3
1,519,846	-		GFF4577	0.45	-0.1
1,519,846	-		GFF4577	0.45	-0.4
1,520,101	-		GFF4577	0.70	+0.1
1,520,101	-		GFF4577	0.70	-0.0
1,520,274	+		GFF4577	0.87	+0.2