Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4336

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
1,264,330	+		GFF4335	0.47	+0.3
1,264,330	+		GFF4335	0.47	-0.5
1,264,435	+		GFF4335	0.53	-0.3
1,264,436	-		GFF4335	0.53	-0.6
1,264,436	-		GFF4335	0.53	-1.3
1,264,534	+		GFF4335	0.58	-1.4
1,264,669	+		GFF4335	0.65	-0.1
1,264,669	+		GFF4335	0.65	-0.6
1,264,669	+		GFF4335	0.65	-0.7
1,264,669	+		GFF4335	0.65	-0.9
1,264,669	+		GFF4335	0.65	+1.1
1,264,669	+		GFF4335	0.65	-0.6
1,264,670	-		GFF4335	0.65	-0.9
1,264,670	-		GFF4335	0.65	-0.4
1,264,670	-		GFF4335	0.65	-0.5
1,264,670	-		GFF4335	0.65	-0.3
1,264,670	-		GFF4335	0.65	-0.3
1,264,670	-		GFF4335	0.65	-0.1
1,264,759	+		GFF4335	0.70	+0.3
1,264,810	+		GFF4335	0.73	+0.4
1,264,810	+		GFF4335	0.73	-0.7
1,264,810	+		GFF4335	0.73	+0.1
1,264,811	-		GFF4335	0.73	-0.8
1,264,915	+		GFF4335	0.78	-0.1
1,264,916	-		GFF4335	0.78	-0.6
1,264,936	+		GFF4335	0.79	-1.1
1,264,937	-		GFF4335	0.80	-0.6
1,265,039	-		GFF4335	0.85	-0.6
1,265,039	-		GFF4335	0.85	-0.3
1,265,039	-		GFF4335	0.85	-2.5
1,265,039	-		GFF4335	0.85	+0.0
1,265,165	-				-0.6
1,265,165	-				-0.2
1,265,165	-				+0.9
1,265,189	-				-0.3
1,265,189	-				-2.6
1,265,189	-				-0.1
1,265,189	-				+0.8
1,265,189	-				+2.5
1,265,206	+				-1.3
1,265,322	+				-1.2
1,265,322	+				-1.3
1,265,322	+				+0.7
1,265,322	+				-1.0
1,265,323	-				-1.7
1,265,323	-				-1.2
1,265,323	-				-1.0
1,265,424	+		GFF4336	0.13	-0.7
1,265,424	+		GFF4336	0.13	-0.0
1,265,424	+		GFF4336	0.13	+0.8
1,265,424	+		GFF4336	0.13	-0.3
1,265,424	+		GFF4336	0.13	+1.5
1,265,424	+		GFF4336	0.13	-0.5
1,265,424	+		GFF4336	0.13	-1.2
1,265,424	+		GFF4336	0.13	-0.4
1,265,424	+		GFF4336	0.13	-0.4
1,265,424	+		GFF4336	0.13	-0.1
1,265,425	-		GFF4336	0.13	-0.8
1,265,425	-		GFF4336	0.13	-1.9
1,265,425	-		GFF4336	0.13	-0.4
1,265,425	-		GFF4336	0.13	-0.0
1,265,425	-		GFF4336	0.13	-0.5
1,265,425	-		GFF4336	0.13	+1.5
1,265,425	-		GFF4336	0.13	-0.3
1,265,544	+		GFF4336	0.24	+0.3
1,265,544	+		GFF4336	0.24	-0.7
1,265,544	+		GFF4336	0.24	-1.7
1,265,544	+		GFF4336	0.24	-1.6
1,265,545	-		GFF4336	0.25	-0.8
1,265,545	-		GFF4336	0.25	-0.7
1,265,799	+		GFF4336	0.48	+0.1
1,265,799	+		GFF4336	0.48	-0.6
1,265,799	+		GFF4336	0.48	-1.2
1,265,931	+		GFF4336	0.61	-0.8
1,265,932	-		GFF4336	0.61	-0.6
1,266,037	-		GFF4336	0.71	-1.1
1,266,037	-		GFF4336	0.71	+0.1
1,266,037	-		GFF4336	0.71	-1.4
1,266,216	+		GFF4336	0.87	+0.3
1,266,216	+		GFF4336	0.87	-0.7
1,266,315	+				-1.1
1,266,315	+				-0.8
1,266,315	+				-1.2
1,266,315	+				-1.8
1,266,315	+				-0.4
1,266,316	-				-1.1
1,266,316	-				-0.2
1,266,316	-				-1.1
1,266,506	-		GFF4337	0.16	-1.2
1,266,520	+		GFF4337	0.18	-0.4
1,266,586	+		GFF4337	0.24	-0.7
1,266,587	-		GFF4337	0.24	-1.4
1,266,640	+		GFF4337	0.29	-0.2
1,266,655	+		GFF4337	0.30	-0.2
1,266,656	-		GFF4337	0.31	-0.7
1,266,656	-		GFF4337	0.31	+0.5
1,266,656	-		GFF4337	0.31	-1.2
1,266,656	-		GFF4337	0.31	-0.2
1,266,676	+		GFF4337	0.32	+0.0
1,266,676	+		GFF4337	0.32	-0.1
1,266,676	+		GFF4337	0.32	-0.4
1,266,676	+		GFF4337	0.32	+0.8
1,266,676	+		GFF4337	0.32	-1.1
1,266,676	+		GFF4337	0.32	-0.3
1,266,677	-		GFF4337	0.33	-0.5
1,266,770	-		GFF4337	0.41	-0.3
1,266,925	+		GFF4337	0.56	-0.6
1,266,925	+		GFF4337	0.56	-0.4
1,267,018	+		GFF4337	0.65	-0.9
1,267,018	+		GFF4337	0.65	+0.6
1,267,018	+		GFF4337	0.65	-0.3
1,267,057	+		GFF4337	0.69	-0.4
1,267,057	+		GFF4337	0.69	-0.7
1,267,057	+		GFF4337	0.69	-1.2
1,267,058	-		GFF4337	0.69	-0.7