Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF423 and GFF424 overlap by 4 nucleotides GFF424 and GFF425 are separated by 135 nucleotides
GFF423 - 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase (EC 4.1.1.45), at 94,315 to 95,364
GFF423
GFF424 - putative exported protein, at 95,361 to 96,332
GFF424
GFF425 - LysR-family transcriptional regulator, at 96,468 to 97,379
GFF425
Position (kb) 95
96
97 Strain fitness (log2 ratio) -1
0
1 at 94.538 kb on + strand, within GFF423 at 94.539 kb on - strand, within GFF423 at 95.084 kb on + strand, within GFF423 at 95.193 kb on - strand, within GFF423 at 95.279 kb on + strand at 95.280 kb on - strand at 95.280 kb on - strand at 95.593 kb on + strand, within GFF424 at 95.782 kb on + strand, within GFF424 at 95.782 kb on + strand, within GFF424 at 95.783 kb on - strand, within GFF424 at 95.926 kb on - strand, within GFF424 at 96.007 kb on + strand, within GFF424 at 96.061 kb on + strand, within GFF424 at 96.064 kb on + strand, within GFF424 at 96.065 kb on - strand, within GFF424 at 96.065 kb on - strand, within GFF424 at 96.065 kb on - strand, within GFF424 at 96.065 kb on - strand, within GFF424 at 96.065 kb on - strand, within GFF424 at 96.188 kb on - strand, within GFF424 at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.374 kb on + strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.375 kb on - strand at 96.440 kb on + strand at 96.440 kb on + strand at 96.966 kb on + strand, within GFF425 at 96.966 kb on + strand, within GFF425 at 96.967 kb on - strand, within GFF425 at 96.967 kb on - strand, within GFF425 at 97.086 kb on + strand, within GFF425 at 97.086 kb on + strand, within GFF425 at 97.086 kb on + strand, within GFF425
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 94,538 + GFF423 0.21 +0.5 94,539 - GFF423 0.21 -0.3 95,084 + GFF423 0.73 +0.3 95,193 - GFF423 0.84 +0.4 95,279 + -0.3 95,280 - -0.6 95,280 - -1.0 95,593 + GFF424 0.24 -0.1 95,782 + GFF424 0.43 +0.2 95,782 + GFF424 0.43 +0.0 95,783 - GFF424 0.43 -0.0 95,926 - GFF424 0.58 +0.2 96,007 + GFF424 0.66 -0.3 96,061 + GFF424 0.72 +1.0 96,064 + GFF424 0.72 -1.4 96,065 - GFF424 0.72 +0.9 96,065 - GFF424 0.72 +1.2 96,065 - GFF424 0.72 +0.7 96,065 - GFF424 0.72 +0.1 96,065 - GFF424 0.72 -0.5 96,188 - GFF424 0.85 +0.2 96,374 + +0.0 96,374 + -0.7 96,374 + +0.5 96,374 + +0.4 96,375 - -0.2 96,375 - -0.1 96,375 - -0.3 96,440 + -0.1 96,440 + +0.4 96,966 + GFF425 0.55 -0.8 96,966 + GFF425 0.55 -0.8 96,967 - GFF425 0.55 +0.5 96,967 - GFF425 0.55 -0.2 97,086 + GFF425 0.68 -0.3 97,086 + GFF425 0.68 -0.1 97,086 + GFF425 0.68 -0.1
Or see this region's nucleotide sequence