Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4206

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
1,118,357	+				+0.2
1,118,357	+				+0.2
1,118,357	+				+0.4
1,118,357	+				+0.2
1,118,378	+				+0.2
1,118,530	+				-1.6
1,118,530	+				-1.1
1,118,530	+				-0.2
1,118,530	+				-0.1
1,118,530	+				+0.8
1,118,530	+				+0.7
1,118,530	+				+0.2
1,118,530	+				-0.2
1,118,530	+				+0.2
1,118,530	+				+0.3
1,118,530	+				-1.3
1,118,530	+				+1.2
1,118,530	+				+0.0
1,118,530	+				-0.9
1,118,530	+				+0.3
1,118,531	-				+0.1
1,118,531	-				-0.5
1,118,531	-				+0.5
1,118,531	-				+0.0
1,118,531	-				+0.8
1,118,531	-				+0.9
1,118,531	-				-1.0
1,118,531	-				-0.3
1,118,531	-				-2.8
1,118,531	-				+0.9
1,118,531	-				+0.4
1,118,531	-				-0.2
1,118,531	-				-0.3
1,118,531	-				-0.2
1,118,531	-				+0.2
1,118,531	-				-0.1
1,118,549	+				+0.2
1,118,549	+				+1.9
1,118,557	+				-0.0
1,118,557	+				-0.5
1,118,578	+				+0.2
1,118,578	+				+0.0
1,118,578	+				-0.2
1,118,579	-				+0.3
1,118,579	-				+0.1
1,118,579	-				+0.5
1,118,579	-				+0.8
1,118,580	+				+0.7
1,118,580	+				+0.3
1,118,580	+				+0.7
1,118,580	+				+0.3
1,118,580	+				+0.7
1,118,580	+				+0.0
1,118,580	+				+1.1
1,118,581	+				+0.5
1,118,581	-				+0.1
1,118,581	-				+0.3
1,118,581	-				-1.0
1,118,581	-				-0.2
1,118,581	-				+0.7
1,118,650	+				+0.0
1,118,650	+				+0.6
1,118,650	+				-0.1
1,118,651	-				+0.4
1,118,651	-				+0.1
1,118,651	-				-0.6
1,118,651	-				+0.8
1,118,651	-				-0.3
1,118,651	-				-0.1
1,118,651	-				-0.5
1,118,651	-				-0.1
1,118,651	-				+0.3
1,118,687	+				+1.5
1,118,687	+				-0.0
1,118,687	+				+0.2
1,118,687	+				+0.4
1,118,687	+				+0.3
1,118,687	+				+0.7
1,118,687	+				+0.6
1,118,688	-				-0.1
1,118,688	-				+0.3
1,118,688	-				+0.4
1,118,688	-				+0.2
1,118,688	-				+2.2
1,118,688	-				+0.0
1,118,869	-		GFF4205	0.29	+0.7
1,118,889	+		GFF4205	0.33	+0.4
1,118,889	+		GFF4205	0.33	+0.2
1,118,889	+		GFF4205	0.33	-0.2
1,118,988	+		GFF4205	0.51	-0.5
1,118,989	-		GFF4205	0.52	-0.3
1,118,989	-		GFF4205	0.52	-0.0
1,119,210	+				-1.0
1,119,210	+				+0.0
1,119,210	+				+0.5
1,119,210	+				+0.2
1,119,210	+				+0.4
1,119,211	-				+0.7
1,119,211	-				+2.1
1,119,211	-				-0.6
1,119,211	-				-0.3
1,119,211	-				+0.7
1,119,225	+				+1.8
1,119,225	+				+0.4
1,119,225	+				+0.6
1,119,225	+				+0.3
1,119,225	+				+0.2
1,119,225	+				+0.8
1,119,225	+				-0.0
1,119,225	+				+0.4
1,119,225	+				+0.5
1,119,226	-				+1.0
1,119,226	-				+0.4
1,119,226	-				+0.8
1,119,226	-				-0.1
1,119,329	+				+0.7
1,119,330	-				+0.4
1,119,330	-				+0.1
1,119,533	+				+0.8
1,119,533	+				-0.9
1,119,534	-				+0.5
1,119,534	-				+1.0
1,119,604	+				+0.0
1,119,604	+				+0.1
1,119,605	-				-0.1
1,119,605	-				+0.5
1,119,648	-				+1.2
1,119,648	-				-0.6
1,119,679	+				+0.8
1,119,679	+				-0.1
1,119,680	-				-0.1
1,119,680	-				+0.8
1,119,680	-				-0.1
1,119,680	-				+0.0
1,119,868	+		GFF4207	0.29	+0.3
1,119,868	+		GFF4207	0.29	+0.3
1,119,868	+		GFF4207	0.29	+0.5
1,119,868	+		GFF4207	0.29	+0.7
1,119,868	+		GFF4207	0.29	+0.4
1,119,868	+		GFF4207	0.29	+0.9
1,119,868	+		GFF4207	0.29	+0.2
1,119,868	+		GFF4207	0.29	+0.1
1,119,868	+		GFF4207	0.29	+0.0
1,119,868	+		GFF4207	0.29	+0.3
1,119,868	+		GFF4207	0.29	+0.3
1,119,869	-		GFF4207	0.29	+0.2
1,119,869	-		GFF4207	0.29	-1.7
1,119,869	-		GFF4207	0.29	+0.2
1,119,869	-		GFF4207	0.29	+0.1
1,119,869	-		GFF4207	0.29	+2.3
1,119,869	-		GFF4207	0.29	+0.0
1,119,869	-		GFF4207	0.29	+0.6
1,120,393	+				+0.6
1,120,393	+				-0.2
1,120,393	+				-0.7
1,120,393	+				+0.5
1,120,393	+				+0.7
1,120,393	+				+0.2
1,120,394	-				+0.1
1,120,394	-				+0.2
1,120,394	-				+0.3
1,120,394	-				+0.5
1,120,394	-				-0.7
1,120,394	-				-0.1