Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4086

Experiment: Ying_sugar7 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4085 and GFF4086 are separated by 101 nucleotidesGFF4086 and GFF4087 are separated by 7 nucleotides GFF4085 - Flagellin protein FlaA, at 997,450 to 998,334 GFF4085 GFF4086 - hypothetical protein, at 998,436 to 999,407 GFF4086 GFF4087 - Flagellar biosynthesis protein FlhA, at 999,415 to 1,001,502 GFF4087 Position (kb) 998 999 1000Strain fitness (log2 ratio) -2 -1 0 1at 997.443 kb on - strandat 997.471 kb on + strandat 997.471 kb on + strandat 997.471 kb on + strandat 998.002 kb on + strand, within GFF4085at 998.003 kb on - strand, within GFF4085at 998.155 kb on + strand, within GFF4085at 998.156 kb on - strand, within GFF4085at 998.333 kb on - strandat 999.468 kb on - strandat 1000.178 kb on + strand, within GFF4087at 1000.179 kb on - strand, within GFF4087at 1000.262 kb on + strand, within GFF4087at 1000.262 kb on + strand, within GFF4087

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2
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997,443 - -1.3
997,471 + -0.2
997,471 + -0.0
997,471 + +1.1
998,002 + GFF4085 0.62 +0.1
998,003 - GFF4085 0.62 -0.3
998,155 + GFF4085 0.80 -1.8
998,156 - GFF4085 0.80 +0.7
998,333 - -0.5
999,468 - +0.1
1,000,178 + GFF4087 0.37 -0.0
1,000,179 - GFF4087 0.37 -0.6
1,000,262 + GFF4087 0.41 -1.1
1,000,262 + GFF4087 0.41 -0.0

Or see this region's nucleotide sequence