Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4053 and GFF4054 are separated by 69 nucleotides GFF4054 and GFF4055 are separated by 315 nucleotides GFF4055 and GFF4056 overlap by 17 nucleotides
GFF4053 - Sensory box histidine kinase, at 970,749 to 972,344
GFF4053
GFF4054 - hypothetical protein, at 972,414 to 972,617
GFF4054
GFF4055 - Flagellar M-ring protein FliF, at 972,933 to 974,615
GFF4055
GFF4056 - Flagellar motor switch protein FliG, at 974,599 to 975,624
GFF4056
Position (kb) 972
973
974
975 Strain fitness (log2 ratio) -2
-1
0
1
2 at 972.266 kb on - strand at 972.536 kb on + strand, within GFF4054 at 972.536 kb on + strand, within GFF4054 at 972.536 kb on + strand, within GFF4054 at 972.536 kb on + strand, within GFF4054 at 972.537 kb on - strand, within GFF4054 at 972.537 kb on - strand, within GFF4054 at 972.537 kb on - strand, within GFF4054 at 972.537 kb on - strand, within GFF4054 at 972.586 kb on - strand, within GFF4054 at 972.682 kb on + strand at 972.684 kb on - strand at 972.847 kb on + strand at 972.847 kb on + strand at 972.847 kb on + strand at 972.847 kb on + strand at 972.847 kb on + strand at 972.847 kb on + strand at 972.848 kb on - strand at 972.848 kb on - strand at 972.927 kb on + strand at 972.927 kb on + strand at 972.928 kb on - strand at 973.092 kb on + strand at 973.092 kb on + strand at 973.737 kb on + strand, within GFF4055 at 973.737 kb on - strand, within GFF4055 at 973.968 kb on + strand, within GFF4055 at 973.969 kb on - strand, within GFF4055 at 974.202 kb on + strand, within GFF4055 at 974.203 kb on - strand, within GFF4055 at 974.857 kb on + strand, within GFF4056 at 974.858 kb on - strand, within GFF4056 at 974.858 kb on - strand, within GFF4056 at 974.923 kb on + strand, within GFF4056 at 975.173 kb on - strand, within GFF4056 at 975.173 kb on - strand, within GFF4056 at 975.325 kb on + strand, within GFF4056 at 975.325 kb on + strand, within GFF4056
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 972,266 - +0.3 972,536 + GFF4054 0.60 +0.1 972,536 + GFF4054 0.60 +0.1 972,536 + GFF4054 0.60 +1.2 972,536 + GFF4054 0.60 -0.1 972,537 - GFF4054 0.60 -0.8 972,537 - GFF4054 0.60 -0.5 972,537 - GFF4054 0.60 -0.4 972,537 - GFF4054 0.60 -0.6 972,586 - GFF4054 0.84 +0.9 972,682 + -0.3 972,684 - -1.8 972,847 + -0.6 972,847 + -0.5 972,847 + +0.1 972,847 + -0.5 972,847 + +0.2 972,847 + +0.0 972,848 - +0.1 972,848 - -0.2 972,927 + -0.3 972,927 + -0.7 972,928 - +1.3 973,092 + -0.0 973,092 + -0.4 973,737 + GFF4055 0.48 -0.3 973,737 - GFF4055 0.48 -1.3 973,968 + GFF4055 0.61 -0.0 973,969 - GFF4055 0.62 -0.0 974,202 + GFF4055 0.75 -0.3 974,203 - GFF4055 0.75 -0.3 974,857 + GFF4056 0.25 +0.9 974,858 - GFF4056 0.25 +0.4 974,858 - GFF4056 0.25 -0.8 974,923 + GFF4056 0.32 +2.5 975,173 - GFF4056 0.56 -0.1 975,173 - GFF4056 0.56 -0.7 975,325 + GFF4056 0.71 +0.1 975,325 + GFF4056 0.71 +0.4
Or see this region's nucleotide sequence