Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3948 and GFF3949 are separated by 7 nucleotides GFF3949 and GFF3950 are separated by 1 nucleotides
GFF3948 - Thymidine phosphorylase (EC 2.4.2.4), at 861,901 to 864,405
GFF3948
GFF3949 - hypothetical protein, at 864,413 to 865,372
GFF3949
GFF3950 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 865,374 to 867,614
GFF3950
Position (kb) 864
865
866 Strain fitness (log2 ratio) -1
0
1 at 863.437 kb on + strand, within GFF3948 at 863.536 kb on + strand, within GFF3948 at 863.537 kb on - strand, within GFF3948 at 863.886 kb on - strand, within GFF3948 at 863.886 kb on - strand, within GFF3948 at 863.886 kb on - strand, within GFF3948 at 864.175 kb on + strand at 864.175 kb on + strand at 864.176 kb on - strand at 864.755 kb on + strand, within GFF3949 at 864.756 kb on - strand, within GFF3949 at 864.771 kb on - strand, within GFF3949 at 864.771 kb on - strand, within GFF3949 at 864.779 kb on + strand, within GFF3949 at 864.779 kb on + strand, within GFF3949 at 864.780 kb on - strand, within GFF3949 at 864.780 kb on - strand, within GFF3949 at 864.780 kb on - strand, within GFF3949 at 865.043 kb on + strand, within GFF3949 at 865.043 kb on + strand, within GFF3949 at 865.044 kb on - strand, within GFF3949 at 865.104 kb on + strand, within GFF3949 at 865.104 kb on + strand, within GFF3949 at 865.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 863,437 + GFF3948 0.61 -0.3 863,536 + GFF3948 0.65 -1.1 863,537 - GFF3948 0.65 +0.1 863,886 - GFF3948 0.79 +0.1 863,886 - GFF3948 0.79 +0.8 863,886 - GFF3948 0.79 +0.1 864,175 + -0.8 864,175 + -0.1 864,176 - -1.2 864,755 + GFF3949 0.36 -0.2 864,756 - GFF3949 0.36 +0.2 864,771 - GFF3949 0.37 +0.2 864,771 - GFF3949 0.37 -0.4 864,779 + GFF3949 0.38 -0.1 864,779 + GFF3949 0.38 +0.7 864,780 - GFF3949 0.38 +0.1 864,780 - GFF3949 0.38 +1.1 864,780 - GFF3949 0.38 +0.5 865,043 + GFF3949 0.66 +0.6 865,043 + GFF3949 0.66 -0.1 865,044 - GFF3949 0.66 +0.2 865,104 + GFF3949 0.72 -0.0 865,104 + GFF3949 0.72 +0.1 865,367 + +0.7
Or see this region's nucleotide sequence