Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3743

Experiment: Ying_sugar7 rep A; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3742 and GFF3743 are separated by 120 nucleotidesGFF3743 and GFF3744 overlap by 4 nucleotidesGFF3744 and GFF3745 are separated by 7 nucleotides GFF3742 - Aldehyde dehydrogenase (EC 1.2.1.3), at 637,875 to 639,095 GFF3742 GFF3743 - Aspartate dehydrogenase homolog, at 639,216 to 640,010 GFF3743 GFF3744 - Acetolactate synthase large subunit (EC 2.2.1.6), at 640,007 to 640,678 GFF3744 GFF3745 - Acetolactate synthase large subunit (EC 2.2.1.6), at 640,686 to 641,759 GFF3745 Position (kb) 639 640 641Strain fitness (log2 ratio) -1 0 1at 639.220 kb on - strandat 639.220 kb on - strandat 639.589 kb on + strand, within GFF3743at 639.590 kb on - strand, within GFF3743at 639.590 kb on - strand, within GFF3743at 639.590 kb on - strand, within GFF3743

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2
remove
639,220 - -0.6
639,220 - +0.0
639,589 + GFF3743 0.47 +0.8
639,590 - GFF3743 0.47 +1.3
639,590 - GFF3743 0.47 +1.3
639,590 - GFF3743 0.47 -0.3

Or see this region's nucleotide sequence