Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3576 and GFF3577 are separated by 4 nucleotides GFF3577 and GFF3578 are separated by 6 nucleotides GFF3578 and GFF3579 are separated by 116 nucleotides
GFF3576 - FIG074102: hypothetical protein, at 463,269 to 464,048
GFF3576
GFF3577 - Pyrrolidone-carboxylate peptidase (EC 3.4.19.3), at 464,053 to 464,700
GFF3577
GFF3578 - FIG00715472: hypothetical protein, at 464,707 to 465,054
GFF3578
GFF3579 - DNA helicase II related protein, at 465,171 to 467,012
GFF3579
Position (kb) 464
465
466 Strain fitness (log2 ratio) -1
0
1 at 463.779 kb on + strand, within GFF3576 at 463.779 kb on + strand, within GFF3576 at 463.833 kb on + strand, within GFF3576 at 463.834 kb on - strand, within GFF3576 at 463.834 kb on - strand, within GFF3576 at 463.834 kb on - strand, within GFF3576 at 463.834 kb on - strand, within GFF3576 at 463.834 kb on - strand, within GFF3576 at 463.966 kb on - strand, within GFF3576 at 463.966 kb on - strand, within GFF3576 at 464.042 kb on - strand at 464.396 kb on - strand, within GFF3577 at 464.503 kb on + strand, within GFF3577 at 464.503 kb on + strand, within GFF3577 at 464.503 kb on + strand, within GFF3577 at 464.504 kb on - strand, within GFF3577 at 464.504 kb on - strand, within GFF3577 at 464.504 kb on - strand, within GFF3577 at 464.504 kb on - strand, within GFF3577 at 464.807 kb on + strand, within GFF3578 at 464.834 kb on + strand, within GFF3578 at 464.835 kb on - strand, within GFF3578 at 464.835 kb on - strand, within GFF3578 at 464.846 kb on + strand, within GFF3578 at 464.846 kb on + strand, within GFF3578 at 464.847 kb on - strand, within GFF3578 at 464.847 kb on - strand, within GFF3578 at 464.918 kb on + strand, within GFF3578 at 464.918 kb on + strand, within GFF3578 at 464.919 kb on - strand, within GFF3578 at 464.919 kb on - strand, within GFF3578 at 464.919 kb on - strand, within GFF3578 at 464.919 kb on - strand, within GFF3578 at 464.942 kb on + strand, within GFF3578 at 464.942 kb on + strand, within GFF3578 at 465.005 kb on + strand, within GFF3578 at 465.005 kb on + strand, within GFF3578 at 465.005 kb on + strand, within GFF3578 at 465.005 kb on + strand, within GFF3578 at 465.006 kb on - strand, within GFF3578 at 465.006 kb on - strand, within GFF3578 at 465.006 kb on - strand, within GFF3578 at 465.006 kb on - strand, within GFF3578 at 465.101 kb on + strand at 465.125 kb on + strand at 465.288 kb on + strand at 465.288 kb on + strand at 465.289 kb on - strand at 465.289 kb on - strand at 465.289 kb on - strand at 465.300 kb on + strand at 465.301 kb on - strand at 465.324 kb on + strand at 465.325 kb on - strand at 465.325 kb on - strand at 465.325 kb on - strand at 465.325 kb on - strand at 465.325 kb on - strand at 465.492 kb on + strand, within GFF3579 at 465.492 kb on + strand, within GFF3579 at 465.492 kb on + strand, within GFF3579 at 465.493 kb on - strand, within GFF3579 at 465.493 kb on - strand, within GFF3579 at 465.586 kb on - strand, within GFF3579 at 465.976 kb on - strand, within GFF3579 at 465.976 kb on - strand, within GFF3579 at 466.038 kb on + strand, within GFF3579 at 466.038 kb on + strand, within GFF3579 at 466.039 kb on - strand, within GFF3579
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 463,779 + GFF3576 0.65 +0.8 463,779 + GFF3576 0.65 +0.4 463,833 + GFF3576 0.72 -0.1 463,834 - GFF3576 0.72 +1.1 463,834 - GFF3576 0.72 -0.3 463,834 - GFF3576 0.72 +0.4 463,834 - GFF3576 0.72 +0.3 463,834 - GFF3576 0.72 +1.5 463,966 - GFF3576 0.89 -0.0 463,966 - GFF3576 0.89 -1.7 464,042 - -0.0 464,396 - GFF3577 0.53 -1.3 464,503 + GFF3577 0.69 -0.4 464,503 + GFF3577 0.69 -0.0 464,503 + GFF3577 0.69 +0.5 464,504 - GFF3577 0.70 -0.6 464,504 - GFF3577 0.70 +0.3 464,504 - GFF3577 0.70 -0.4 464,504 - GFF3577 0.70 +0.5 464,807 + GFF3578 0.29 +0.2 464,834 + GFF3578 0.36 +0.4 464,835 - GFF3578 0.37 -0.2 464,835 - GFF3578 0.37 -0.7 464,846 + GFF3578 0.40 -0.2 464,846 + GFF3578 0.40 -0.2 464,847 - GFF3578 0.40 -0.4 464,847 - GFF3578 0.40 -0.2 464,918 + GFF3578 0.61 -0.4 464,918 + GFF3578 0.61 -0.3 464,919 - GFF3578 0.61 +0.3 464,919 - GFF3578 0.61 -0.4 464,919 - GFF3578 0.61 +0.1 464,919 - GFF3578 0.61 -0.6 464,942 + GFF3578 0.68 -0.5 464,942 + GFF3578 0.68 +0.1 465,005 + GFF3578 0.86 +0.5 465,005 + GFF3578 0.86 +0.4 465,005 + GFF3578 0.86 -0.5 465,005 + GFF3578 0.86 -1.0 465,006 - GFF3578 0.86 -0.5 465,006 - GFF3578 0.86 +0.0 465,006 - GFF3578 0.86 -0.2 465,006 - GFF3578 0.86 -1.4 465,101 + +1.4 465,125 + +0.3 465,288 + +0.3 465,288 + +0.8 465,289 - -0.1 465,289 - -0.4 465,289 - -0.1 465,300 + +0.2 465,301 - -0.1 465,324 + +0.6 465,325 - -0.1 465,325 - +0.7 465,325 - -0.1 465,325 - +0.6 465,325 - -0.8 465,492 + GFF3579 0.17 +0.3 465,492 + GFF3579 0.17 +0.1 465,492 + GFF3579 0.17 -0.2 465,493 - GFF3579 0.17 +0.5 465,493 - GFF3579 0.17 +0.6 465,586 - GFF3579 0.23 -1.6 465,976 - GFF3579 0.44 +0.2 465,976 - GFF3579 0.44 -0.8 466,038 + GFF3579 0.47 -0.4 466,038 + GFF3579 0.47 -0.5 466,039 - GFF3579 0.47 -1.4
Or see this region's nucleotide sequence