Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3523 and GFF3524 are separated by 69 nucleotides GFF3524 and GFF3525 are separated by 12 nucleotides GFF3525 and GFF3526 overlap by 4 nucleotides GFF3526 and GFF3527 are separated by 383 nucleotides
GFF3523 - Two-component system response regulator QseB, at 407,550 to 408,212
GFF3523
GFF3524 - hypothetical protein, at 408,282 to 408,665
GFF3524
GFF3525 - DUF1854 domain-containing protein, at 408,678 to 409,154
GFF3525
GFF3526 - Lipid A export ATP-binding/permease protein MsbA, at 409,151 to 411,217
GFF3526
GFF3527 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 411,601 to 413,826
GFF3527
Position (kb) 409
410
411
412 Strain fitness (log2 ratio) -2
-1
0
1
2 at 408.201 kb on + strand at 408.201 kb on + strand at 408.202 kb on - strand at 408.220 kb on + strand at 408.220 kb on + strand at 408.220 kb on + strand at 408.220 kb on + strand at 408.221 kb on - strand at 408.221 kb on - strand at 408.221 kb on - strand at 408.221 kb on - strand at 408.251 kb on + strand at 408.251 kb on + strand at 408.252 kb on - strand at 408.252 kb on - strand at 408.252 kb on - strand at 408.555 kb on + strand, within GFF3524 at 409.227 kb on + strand at 409.239 kb on + strand at 409.239 kb on + strand at 409.546 kb on - strand, within GFF3526 at 409.546 kb on - strand, within GFF3526 at 409.546 kb on - strand, within GFF3526 at 409.773 kb on + strand, within GFF3526 at 409.773 kb on + strand, within GFF3526 at 410.067 kb on + strand, within GFF3526 at 410.067 kb on + strand, within GFF3526 at 410.067 kb on + strand, within GFF3526 at 410.067 kb on + strand, within GFF3526 at 410.067 kb on + strand, within GFF3526 at 410.068 kb on - strand, within GFF3526 at 410.082 kb on + strand, within GFF3526 at 410.083 kb on - strand, within GFF3526 at 410.607 kb on + strand, within GFF3526 at 410.832 kb on + strand, within GFF3526 at 410.832 kb on + strand, within GFF3526 at 410.833 kb on - strand, within GFF3526 at 410.833 kb on - strand, within GFF3526 at 410.902 kb on - strand, within GFF3526 at 411.151 kb on + strand at 411.151 kb on + strand at 411.152 kb on - strand at 411.152 kb on - strand at 411.152 kb on - strand at 411.152 kb on - strand at 411.152 kb on - strand at 411.163 kb on + strand at 411.231 kb on - strand at 411.296 kb on + strand at 411.297 kb on - strand at 411.337 kb on + strand at 411.563 kb on + strand at 411.563 kb on + strand at 411.564 kb on - strand at 411.564 kb on - strand at 411.580 kb on - strand at 411.640 kb on + strand at 411.640 kb on + strand at 411.640 kb on + strand at 411.640 kb on + strand at 411.640 kb on + strand at 411.641 kb on - strand at 411.641 kb on - strand at 411.641 kb on - strand at 411.641 kb on - strand at 411.667 kb on + strand at 411.667 kb on + strand at 411.667 kb on + strand at 411.668 kb on - strand at 411.940 kb on + strand, within GFF3527 at 411.941 kb on - strand, within GFF3527 at 412.099 kb on + strand, within GFF3527 at 412.099 kb on + strand, within GFF3527 at 412.100 kb on - strand, within GFF3527 at 412.100 kb on - strand, within GFF3527
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 408,201 + -0.4 408,201 + -0.0 408,202 - +0.2 408,220 + -0.3 408,220 + +0.1 408,220 + +0.1 408,220 + +0.0 408,221 - +0.6 408,221 - -0.4 408,221 - +0.7 408,221 - -0.1 408,251 + +0.2 408,251 + -2.3 408,252 - -0.3 408,252 - -0.1 408,252 - -0.6 408,555 + GFF3524 0.71 +0.6 409,227 + -0.7 409,239 + +0.3 409,239 + +0.1 409,546 - GFF3526 0.19 +1.3 409,546 - GFF3526 0.19 -0.1 409,546 - GFF3526 0.19 -0.5 409,773 + GFF3526 0.30 +0.3 409,773 + GFF3526 0.30 +0.1 410,067 + GFF3526 0.44 -0.0 410,067 + GFF3526 0.44 +0.2 410,067 + GFF3526 0.44 +1.1 410,067 + GFF3526 0.44 +0.7 410,067 + GFF3526 0.44 +0.7 410,068 - GFF3526 0.44 -0.4 410,082 + GFF3526 0.45 +0.5 410,083 - GFF3526 0.45 +0.3 410,607 + GFF3526 0.70 -1.3 410,832 + GFF3526 0.81 -0.6 410,832 + GFF3526 0.81 +0.3 410,833 - GFF3526 0.81 +0.4 410,833 - GFF3526 0.81 -1.3 410,902 - GFF3526 0.85 +0.5 411,151 + -0.3 411,151 + +0.1 411,152 - +0.0 411,152 - -1.0 411,152 - +1.1 411,152 - +0.5 411,152 - -0.3 411,163 + +0.2 411,231 - +0.1 411,296 + +1.5 411,297 - +0.2 411,337 + +1.8 411,563 + +0.3 411,563 + -0.8 411,564 - +0.3 411,564 - +0.2 411,580 - +1.2 411,640 + +1.2 411,640 + -0.1 411,640 + -0.2 411,640 + +0.8 411,640 + +1.0 411,641 - +0.6 411,641 - +0.3 411,641 - +0.4 411,641 - -0.1 411,667 + +0.6 411,667 + -0.3 411,667 + +1.3 411,668 - -0.1 411,940 + GFF3527 0.15 -0.2 411,941 - GFF3527 0.15 -0.4 412,099 + GFF3527 0.22 +0.7 412,099 + GFF3527 0.22 +0.1 412,100 - GFF3527 0.22 +0.6 412,100 - GFF3527 0.22 +0.2
Or see this region's nucleotide sequence