Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3517 and GFF3518 are separated by 28 nucleotides GFF3518 and GFF3519 are separated by 93 nucleotides GFF3519 and GFF3520 are separated by 63 nucleotides GFF3520 and GFF3521 are separated by 24 nucleotides GFF3521 and GFF3522 overlap by 4 nucleotides
GFF3517 - RNA polymerase sigma-70 factor, at 402,826 to 403,401
GFF3517
GFF3518 - Putative outer membrane lipoprotein, at 403,430 to 404,269
GFF3518
GFF3519 - Transcriptional regulator, LysR family, at 404,363 to 405,295
GFF3519
GFF3520 - hypothetical protein, at 405,359 to 405,592
GFF3520
GFF3521 - hypothetical protein, at 405,617 to 406,183
GFF3521
GFF3522 - Sensory histidine kinase QseC, at 406,180 to 407,553
GFF3522
Position (kb) 404
405
406 Strain fitness (log2 ratio) -1
0
1 at 403.971 kb on + strand, within GFF3518 at 404.080 kb on - strand, within GFF3518 at 404.424 kb on + strand at 404.424 kb on + strand at 404.424 kb on + strand at 404.424 kb on + strand at 404.425 kb on - strand at 404.784 kb on + strand, within GFF3519 at 404.884 kb on - strand, within GFF3519 at 405.309 kb on + strand at 405.342 kb on - strand at 405.941 kb on + strand, within GFF3521
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 403,971 + GFF3518 0.64 -0.1 404,080 - GFF3518 0.77 -0.5 404,424 + -0.4 404,424 + +0.1 404,424 + -1.0 404,424 + +0.0 404,425 - -0.7 404,784 + GFF3519 0.45 -0.4 404,884 - GFF3519 0.56 -0.3 405,309 + +0.4 405,342 - -0.3 405,941 + GFF3521 0.57 -0.2
Or see this region's nucleotide sequence