Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3418 and GFF3419 overlap by 1 nucleotides GFF3419 and GFF3420 overlap by 4 nucleotides GFF3420 and GFF3421 are separated by 268 nucleotides GFF3421 and GFF3422 are separated by 137 nucleotides
GFF3418 - Methyltransferase (EC 2.1.1.-), at 302,729 to 303,658
GFF3418
GFF3419 - Ornithine carbamoyltransferase (EC 2.1.3.3), at 303,658 to 304,599
GFF3419
GFF3420 - Acetylornithine aminotransferase (EC 2.6.1.11), at 304,596 to 305,795
GFF3420
GFF3421 - Histone acetyltransferase HPA2 and related acetyltransferases, at 306,064 to 306,384
GFF3421
GFF3422 - SSU ribosomal protein S20p, at 306,522 to 306,821
GFF3422
Position (kb) 304
305
306 Strain fitness (log2 ratio) -2
-1
0
1 at 305.182 kb on + strand, within GFF3420 at 305.183 kb on - strand, within GFF3420 at 305.183 kb on - strand, within GFF3420 at 305.444 kb on - strand, within GFF3420 at 305.567 kb on - strand, within GFF3420 at 305.567 kb on - strand, within GFF3420 at 305.567 kb on - strand, within GFF3420 at 305.567 kb on - strand, within GFF3420 at 305.569 kb on + strand, within GFF3420 at 305.570 kb on - strand, within GFF3420 at 305.570 kb on - strand, within GFF3420 at 305.570 kb on - strand, within GFF3420 at 305.570 kb on - strand, within GFF3420 at 305.678 kb on - strand at 305.866 kb on + strand at 305.867 kb on - strand at 305.867 kb on - strand at 305.925 kb on + strand at 305.925 kb on + strand at 305.963 kb on + strand at 305.964 kb on - strand at 305.965 kb on + strand at 305.966 kb on - strand at 305.968 kb on - strand at 305.972 kb on + strand at 305.978 kb on - strand at 305.978 kb on - strand at 305.978 kb on - strand at 306.211 kb on + strand, within GFF3421 at 306.211 kb on + strand, within GFF3421 at 306.211 kb on + strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421 at 306.212 kb on - strand, within GFF3421
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 305,182 + GFF3420 0.49 -0.7 305,183 - GFF3420 0.49 -0.5 305,183 - GFF3420 0.49 -1.3 305,444 - GFF3420 0.71 -1.5 305,567 - GFF3420 0.81 -1.7 305,567 - GFF3420 0.81 -0.5 305,567 - GFF3420 0.81 +0.6 305,567 - GFF3420 0.81 -1.4 305,569 + GFF3420 0.81 -0.3 305,570 - GFF3420 0.81 +0.5 305,570 - GFF3420 0.81 -0.5 305,570 - GFF3420 0.81 -1.4 305,570 - GFF3420 0.81 -1.2 305,678 - -1.5 305,866 + -0.3 305,867 - -0.2 305,867 - -0.5 305,925 + -0.3 305,925 + -1.2 305,963 + -1.2 305,964 - +0.6 305,965 + -1.8 305,966 - -1.5 305,968 - +0.4 305,972 + +1.1 305,978 - -1.4 305,978 - +0.1 305,978 - +0.6 306,211 + GFF3421 0.46 -0.3 306,211 + GFF3421 0.46 +1.2 306,211 + GFF3421 0.46 -0.3 306,212 - GFF3421 0.46 +0.3 306,212 - GFF3421 0.46 +0.3 306,212 - GFF3421 0.46 +0.9 306,212 - GFF3421 0.46 +0.7 306,212 - GFF3421 0.46 +0.6 306,212 - GFF3421 0.46 +0.2 306,212 - GFF3421 0.46 -0.5 306,212 - GFF3421 0.46 +0.1 306,212 - GFF3421 0.46 -0.8
Or see this region's nucleotide sequence