Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3389 and GFF3390 are separated by 76 nucleotides GFF3390 and GFF3391 are separated by 11 nucleotides GFF3391 and GFF3392 are separated by 475 nucleotides
GFF3389 - putative exported protein, at 273,476 to 274,465
GFF3389
GFF3390 - Glucans biosynthesis protein C (EC 2.1.-.-), at 274,542 to 275,717
GFF3390
GFF3391 - hypothetical protein, at 275,729 to 276,061
GFF3391
GFF3392 - hypothetical protein, at 276,537 to 277,115
GFF3392
Position (kb) 274
275
276 Strain fitness (log2 ratio) -1
0
1
2 at 273.821 kb on + strand, within GFF3389 at 273.821 kb on + strand, within GFF3389 at 273.821 kb on + strand, within GFF3389 at 273.822 kb on - strand, within GFF3389 at 273.822 kb on - strand, within GFF3389 at 273.822 kb on - strand, within GFF3389 at 273.822 kb on - strand, within GFF3389 at 273.822 kb on - strand, within GFF3389 at 273.822 kb on - strand, within GFF3389 at 273.822 kb on - strand, within GFF3389 at 273.918 kb on - strand, within GFF3389 at 273.956 kb on + strand, within GFF3389 at 273.956 kb on + strand, within GFF3389 at 273.956 kb on + strand, within GFF3389 at 274.527 kb on + strand at 274.527 kb on + strand at 274.527 kb on + strand at 274.651 kb on - strand at 275.151 kb on + strand, within GFF3390 at 275.152 kb on - strand, within GFF3390 at 275.152 kb on - strand, within GFF3390 at 275.214 kb on + strand, within GFF3390 at 275.223 kb on + strand, within GFF3390 at 275.224 kb on - strand, within GFF3390 at 275.377 kb on - strand, within GFF3390 at 275.484 kb on + strand, within GFF3390 at 275.485 kb on - strand, within GFF3390 at 275.494 kb on - strand, within GFF3390 at 275.494 kb on - strand, within GFF3390 at 275.614 kb on - strand at 275.614 kb on - strand at 275.614 kb on - strand at 275.730 kb on + strand at 275.730 kb on + strand at 275.731 kb on - strand at 275.731 kb on - strand at 275.731 kb on - strand at 275.731 kb on - strand at 275.731 kb on - strand at 275.756 kb on + strand at 275.850 kb on + strand, within GFF3391 at 275.850 kb on + strand, within GFF3391 at 275.851 kb on - strand, within GFF3391 at 276.399 kb on + strand at 276.400 kb on - strand at 276.536 kb on + strand at 276.536 kb on + strand at 276.536 kb on + strand at 276.536 kb on + strand at 276.536 kb on + strand at 276.536 kb on + strand at 276.708 kb on + strand, within GFF3392
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 273,821 + GFF3389 0.35 +0.1 273,821 + GFF3389 0.35 -0.2 273,821 + GFF3389 0.35 -1.6 273,822 - GFF3389 0.35 -1.3 273,822 - GFF3389 0.35 -0.7 273,822 - GFF3389 0.35 +0.0 273,822 - GFF3389 0.35 -1.4 273,822 - GFF3389 0.35 +0.0 273,822 - GFF3389 0.35 -0.5 273,822 - GFF3389 0.35 -0.6 273,918 - GFF3389 0.45 -0.6 273,956 + GFF3389 0.48 +0.1 273,956 + GFF3389 0.48 -0.1 273,956 + GFF3389 0.48 +0.5 274,527 + +2.5 274,527 + -1.5 274,527 + -0.2 274,651 - -0.2 275,151 + GFF3390 0.52 -1.0 275,152 - GFF3390 0.52 -0.1 275,152 - GFF3390 0.52 -1.5 275,214 + GFF3390 0.57 -0.2 275,223 + GFF3390 0.58 +0.8 275,224 - GFF3390 0.58 +0.2 275,377 - GFF3390 0.71 -1.4 275,484 + GFF3390 0.80 -1.1 275,485 - GFF3390 0.80 -0.4 275,494 - GFF3390 0.81 -0.6 275,494 - GFF3390 0.81 +0.3 275,614 - +0.2 275,614 - +0.1 275,614 - +0.7 275,730 + -0.3 275,730 + -0.2 275,731 - +0.1 275,731 - -0.4 275,731 - -0.4 275,731 - -0.1 275,731 - -0.4 275,756 + +0.3 275,850 + GFF3391 0.36 +0.4 275,850 + GFF3391 0.36 +0.0 275,851 - GFF3391 0.37 +0.2 276,399 + +0.2 276,400 - +0.6 276,536 + -0.5 276,536 + +0.5 276,536 + -0.2 276,536 + +0.2 276,536 + +0.2 276,536 + -0.2 276,708 + GFF3392 0.30 -0.3
Or see this region's nucleotide sequence