Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF316 and GFF317 are separated by 90 nucleotides GFF317 and GFF318 are separated by 8 nucleotides GFF318 and GFF319 are separated by 9 nucleotides GFF319 and GFF320 overlap by 4 nucleotides
GFF316 - Mercuric resistance operon regulatory protein, at 340,266 to 340,676
GFF316
GFF317 - Mercuric transport protein, MerT, at 340,767 to 341,123
GFF317
GFF318 - hypothetical protein, at 341,132 to 341,263
GFF318
GFF319 - Periplasmic mercury(+2) binding protein, at 341,273 to 341,563
GFF319
GFF320 - Mercuric ion reductase (EC 1.16.1.1), at 341,560 to 343,230
GFF320
Position (kb) 340
341
342 Strain fitness (log2 ratio) -1
0
1
2 at 339.768 kb on + strand at 339.774 kb on + strand at 339.775 kb on - strand at 339.786 kb on + strand at 339.787 kb on - strand at 339.787 kb on - strand at 339.787 kb on - strand at 339.800 kb on + strand at 339.816 kb on + strand at 339.816 kb on + strand at 339.817 kb on - strand at 339.904 kb on - strand at 339.932 kb on + strand at 339.932 kb on + strand at 339.948 kb on + strand at 340.024 kb on - strand at 340.133 kb on + strand at 340.146 kb on - strand at 340.146 kb on - strand at 340.146 kb on - strand at 340.164 kb on + strand at 340.183 kb on + strand at 340.183 kb on + strand at 340.184 kb on - strand at 340.184 kb on - strand at 340.184 kb on - strand at 340.184 kb on - strand at 340.191 kb on + strand at 340.199 kb on + strand at 340.199 kb on + strand at 340.201 kb on - strand at 340.228 kb on + strand at 340.228 kb on + strand at 340.241 kb on + strand at 340.267 kb on + strand at 340.267 kb on + strand at 340.268 kb on - strand at 340.549 kb on + strand, within GFF316 at 340.691 kb on - strand at 340.721 kb on + strand at 340.721 kb on + strand at 340.721 kb on + strand at 340.721 kb on + strand at 340.766 kb on + strand at 340.855 kb on + strand, within GFF317 at 340.855 kb on + strand, within GFF317 at 340.856 kb on - strand, within GFF317 at 340.974 kb on + strand, within GFF317 at 341.095 kb on - strand at 341.095 kb on - strand at 341.100 kb on + strand at 341.100 kb on + strand at 341.100 kb on + strand at 341.101 kb on - strand at 341.101 kb on - strand at 341.101 kb on - strand at 341.101 kb on - strand at 341.192 kb on + strand, within GFF318 at 341.209 kb on + strand, within GFF318 at 341.209 kb on + strand, within GFF318 at 341.210 kb on - strand, within GFF318 at 341.258 kb on + strand at 341.258 kb on + strand at 341.259 kb on - strand at 341.259 kb on - strand at 341.259 kb on - strand at 341.261 kb on + strand at 341.290 kb on + strand at 341.343 kb on + strand, within GFF319 at 342.115 kb on + strand, within GFF320
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 339,768 + -0.0 339,774 + +0.7 339,775 - -0.1 339,786 + -0.3 339,787 - -0.4 339,787 - +0.2 339,787 - +0.0 339,800 + +0.5 339,816 + -0.2 339,816 + +0.1 339,817 - -0.6 339,904 - +0.7 339,932 + -0.5 339,932 + -0.3 339,948 + +0.9 340,024 - -0.2 340,133 + +0.2 340,146 - +0.4 340,146 - +0.7 340,146 - +0.3 340,164 + -0.6 340,183 + +0.1 340,183 + -0.8 340,184 - -0.4 340,184 - -0.1 340,184 - -0.6 340,184 - -0.4 340,191 + +1.0 340,199 + -0.5 340,199 + +0.3 340,201 - +0.7 340,228 + +0.3 340,228 + -0.2 340,241 + -0.2 340,267 + +0.6 340,267 + +0.0 340,268 - -0.8 340,549 + GFF316 0.69 -0.3 340,691 - -0.7 340,721 + +0.6 340,721 + -0.1 340,721 + +0.1 340,721 + +1.4 340,766 + -0.4 340,855 + GFF317 0.25 +0.1 340,855 + GFF317 0.25 +1.8 340,856 - GFF317 0.25 -0.5 340,974 + GFF317 0.58 +0.6 341,095 - -0.6 341,095 - -0.2 341,100 + -0.9 341,100 + -0.7 341,100 + +0.2 341,101 - -0.7 341,101 - -0.1 341,101 - -0.8 341,101 - -0.3 341,192 + GFF318 0.45 -0.2 341,209 + GFF318 0.58 +1.2 341,209 + GFF318 0.58 -0.4 341,210 - GFF318 0.59 -0.2 341,258 + -0.2 341,258 + -1.5 341,259 - -1.2 341,259 - -0.1 341,259 - +0.1 341,261 + -0.0 341,290 + -0.1 341,343 + GFF319 0.24 -0.2 342,115 + GFF320 0.33 -0.2
Or see this region's nucleotide sequence