Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3026 and GFF3027 are separated by 102 nucleotides GFF3027 and GFF3028 overlap by 4 nucleotides
GFF3026 - putative membrane protein, at 103,249 to 104,328
GFF3026
GFF3027 - Tricarboxylate transport transcriptional regulator TctD, at 104,431 to 105,099
GFF3027
GFF3028 - Tricarboxylate transport sensor protein TctE, at 105,096 to 106,517
GFF3028
Position (kb) 104
105
106 Strain fitness (log2 ratio) -2
-1
0
1
2 at 103.495 kb on + strand, within GFF3026 at 103.495 kb on + strand, within GFF3026 at 103.495 kb on + strand, within GFF3026 at 103.496 kb on - strand, within GFF3026 at 103.496 kb on - strand, within GFF3026 at 103.612 kb on + strand, within GFF3026 at 103.612 kb on + strand, within GFF3026 at 103.613 kb on - strand, within GFF3026 at 103.613 kb on - strand, within GFF3026 at 103.613 kb on - strand, within GFF3026 at 103.693 kb on + strand, within GFF3026 at 103.693 kb on + strand, within GFF3026 at 103.693 kb on + strand, within GFF3026 at 103.694 kb on - strand, within GFF3026 at 103.694 kb on - strand, within GFF3026 at 103.694 kb on - strand, within GFF3026 at 103.694 kb on - strand, within GFF3026 at 103.777 kb on + strand, within GFF3026 at 104.048 kb on - strand, within GFF3026 at 104.398 kb on + strand at 104.398 kb on + strand at 104.398 kb on + strand at 104.399 kb on - strand at 104.430 kb on + strand at 104.430 kb on + strand at 104.430 kb on + strand at 104.430 kb on + strand at 104.431 kb on + strand at 104.431 kb on - strand at 104.431 kb on - strand at 104.431 kb on - strand at 104.563 kb on + strand, within GFF3027 at 104.830 kb on + strand, within GFF3027 at 104.830 kb on + strand, within GFF3027 at 104.830 kb on + strand, within GFF3027 at 104.830 kb on + strand, within GFF3027 at 104.831 kb on - strand, within GFF3027 at 104.831 kb on - strand, within GFF3027 at 105.076 kb on + strand at 105.077 kb on - strand at 105.077 kb on - strand at 105.077 kb on - strand at 105.077 kb on - strand at 105.232 kb on - strand at 105.232 kb on - strand at 105.232 kb on - strand at 105.468 kb on + strand, within GFF3028 at 105.469 kb on - strand, within GFF3028 at 105.469 kb on - strand, within GFF3028 at 105.471 kb on + strand, within GFF3028 at 105.498 kb on + strand, within GFF3028 at 105.910 kb on - strand, within GFF3028
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 103,495 + GFF3026 0.23 +0.2 103,495 + GFF3026 0.23 -0.0 103,495 + GFF3026 0.23 -0.8 103,496 - GFF3026 0.23 +0.2 103,496 - GFF3026 0.23 -0.0 103,612 + GFF3026 0.34 -0.2 103,612 + GFF3026 0.34 +0.1 103,613 - GFF3026 0.34 -0.4 103,613 - GFF3026 0.34 +0.3 103,613 - GFF3026 0.34 -2.0 103,693 + GFF3026 0.41 +0.0 103,693 + GFF3026 0.41 +0.3 103,693 + GFF3026 0.41 +0.5 103,694 - GFF3026 0.41 +0.0 103,694 - GFF3026 0.41 -0.4 103,694 - GFF3026 0.41 -0.4 103,694 - GFF3026 0.41 +0.1 103,777 + GFF3026 0.49 +0.1 104,048 - GFF3026 0.74 -0.2 104,398 + +0.1 104,398 + +0.1 104,398 + +0.5 104,399 - -0.3 104,430 + -0.1 104,430 + -0.1 104,430 + -0.3 104,430 + -0.8 104,431 + -0.2 104,431 - +0.6 104,431 - -0.1 104,431 - +0.5 104,563 + GFF3027 0.20 +0.4 104,830 + GFF3027 0.60 -0.4 104,830 + GFF3027 0.60 +1.1 104,830 + GFF3027 0.60 +0.7 104,830 + GFF3027 0.60 -0.6 104,831 - GFF3027 0.60 +0.2 104,831 - GFF3027 0.60 +0.8 105,076 + -0.3 105,077 - -0.2 105,077 - -0.3 105,077 - -0.3 105,077 - +0.5 105,232 - +0.6 105,232 - +0.5 105,232 - -1.2 105,468 + GFF3028 0.26 -0.5 105,469 - GFF3028 0.26 +0.2 105,469 - GFF3028 0.26 -1.6 105,471 + GFF3028 0.26 -0.4 105,498 + GFF3028 0.28 -0.5 105,910 - GFF3028 0.57 +1.8
Or see this region's nucleotide sequence