Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3023 and GFF3024 are separated by 64 nucleotides GFF3024 and GFF3025 are separated by 5 nucleotides GFF3025 and GFF3026 are separated by 132 nucleotides
GFF3023 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 99,751 to 100,776
GFF3023
GFF3024 - Glutamine amidotransferase, class-II, at 100,841 to 101,605
GFF3024
GFF3025 - Multidrug resistance protein B, at 101,611 to 103,116
GFF3025
GFF3026 - putative membrane protein, at 103,249 to 104,328
GFF3026
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 100.619 kb on + strand, within GFF3023 at 100.620 kb on - strand, within GFF3023 at 100.653 kb on - strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 101.265 kb on + strand, within GFF3024 at 101.265 kb on + strand, within GFF3024 at 101.266 kb on - strand, within GFF3024 at 101.612 kb on + strand at 101.613 kb on - strand at 102.170 kb on + strand, within GFF3025 at 102.170 kb on + strand, within GFF3025 at 102.170 kb on + strand, within GFF3025 at 102.170 kb on + strand, within GFF3025 at 102.171 kb on - strand, within GFF3025 at 102.171 kb on - strand, within GFF3025 at 102.171 kb on - strand, within GFF3025 at 102.185 kb on + strand, within GFF3025 at 102.185 kb on + strand, within GFF3025 at 102.185 kb on + strand, within GFF3025 at 102.185 kb on + strand, within GFF3025 at 102.186 kb on - strand, within GFF3025 at 102.186 kb on - strand, within GFF3025 at 102.186 kb on - strand, within GFF3025 at 102.212 kb on + strand, within GFF3025 at 102.212 kb on + strand, within GFF3025 at 102.213 kb on - strand, within GFF3025 at 102.213 kb on - strand, within GFF3025 at 102.213 kb on - strand, within GFF3025 at 102.213 kb on - strand, within GFF3025 at 102.785 kb on + strand, within GFF3025 at 102.786 kb on - strand, within GFF3025 at 102.845 kb on + strand, within GFF3025 at 102.845 kb on + strand, within GFF3025 at 102.846 kb on - strand, within GFF3025 at 102.846 kb on - strand, within GFF3025 at 102.846 kb on - strand, within GFF3025 at 103.059 kb on - strand at 103.207 kb on + strand at 103.207 kb on + strand at 103.207 kb on + strand at 103.207 kb on + strand at 103.208 kb on - strand at 103.209 kb on + strand at 103.209 kb on + strand at 103.210 kb on - strand at 103.210 kb on - strand at 103.318 kb on + strand at 103.319 kb on - strand at 103.319 kb on - strand at 103.319 kb on - strand at 103.319 kb on - strand at 103.319 kb on - strand at 103.495 kb on + strand, within GFF3026 at 103.495 kb on + strand, within GFF3026 at 103.495 kb on + strand, within GFF3026 at 103.496 kb on - strand, within GFF3026 at 103.496 kb on - strand, within GFF3026 at 103.612 kb on + strand, within GFF3026 at 103.612 kb on + strand, within GFF3026 at 103.613 kb on - strand, within GFF3026 at 103.613 kb on - strand, within GFF3026 at 103.613 kb on - strand, within GFF3026 at 103.693 kb on + strand, within GFF3026 at 103.693 kb on + strand, within GFF3026 at 103.693 kb on + strand, within GFF3026 at 103.694 kb on - strand, within GFF3026 at 103.694 kb on - strand, within GFF3026 at 103.694 kb on - strand, within GFF3026 at 103.694 kb on - strand, within GFF3026 at 103.777 kb on + strand, within GFF3026 at 104.048 kb on - strand, within GFF3026
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 100,619 + GFF3023 0.85 -0.2 100,620 - GFF3023 0.85 +0.8 100,653 - GFF3023 0.88 -0.0 100,655 + GFF3023 0.88 -0.2 100,655 + GFF3023 0.88 -1.1 100,655 + GFF3023 0.88 -0.4 100,655 + GFF3023 0.88 +0.2 100,655 + GFF3023 0.88 -0.0 100,655 + GFF3023 0.88 +0.3 100,655 + GFF3023 0.88 +0.1 100,656 - GFF3023 0.88 +0.0 100,656 - GFF3023 0.88 -0.3 100,656 - GFF3023 0.88 -0.2 100,656 - GFF3023 0.88 -0.4 100,656 - GFF3023 0.88 +0.1 101,265 + GFF3024 0.55 -0.6 101,265 + GFF3024 0.55 +1.0 101,266 - GFF3024 0.56 +0.2 101,612 + +0.5 101,613 - -0.0 102,170 + GFF3025 0.37 -0.3 102,170 + GFF3025 0.37 -0.4 102,170 + GFF3025 0.37 -0.2 102,170 + GFF3025 0.37 +0.1 102,171 - GFF3025 0.37 -1.6 102,171 - GFF3025 0.37 +0.1 102,171 - GFF3025 0.37 -1.2 102,185 + GFF3025 0.38 +0.2 102,185 + GFF3025 0.38 -0.3 102,185 + GFF3025 0.38 +0.3 102,185 + GFF3025 0.38 -0.3 102,186 - GFF3025 0.38 -0.1 102,186 - GFF3025 0.38 +0.2 102,186 - GFF3025 0.38 +0.2 102,212 + GFF3025 0.40 +0.5 102,212 + GFF3025 0.40 +0.1 102,213 - GFF3025 0.40 +0.6 102,213 - GFF3025 0.40 +0.6 102,213 - GFF3025 0.40 -1.4 102,213 - GFF3025 0.40 +0.5 102,785 + GFF3025 0.78 -0.6 102,786 - GFF3025 0.78 +0.4 102,845 + GFF3025 0.82 +0.4 102,845 + GFF3025 0.82 +0.7 102,846 - GFF3025 0.82 -0.1 102,846 - GFF3025 0.82 -0.1 102,846 - GFF3025 0.82 -0.4 103,059 - -0.5 103,207 + -2.6 103,207 + +0.3 103,207 + +0.3 103,207 + -0.4 103,208 - +0.1 103,209 + -0.2 103,209 + -0.5 103,210 - -0.6 103,210 - +0.8 103,318 + +2.0 103,319 - +0.8 103,319 - +0.3 103,319 - +0.5 103,319 - +0.9 103,319 - +0.0 103,495 + GFF3026 0.23 +0.2 103,495 + GFF3026 0.23 -0.0 103,495 + GFF3026 0.23 -0.8 103,496 - GFF3026 0.23 +0.2 103,496 - GFF3026 0.23 -0.0 103,612 + GFF3026 0.34 -0.2 103,612 + GFF3026 0.34 +0.1 103,613 - GFF3026 0.34 -0.4 103,613 - GFF3026 0.34 +0.3 103,613 - GFF3026 0.34 -2.0 103,693 + GFF3026 0.41 +0.0 103,693 + GFF3026 0.41 +0.3 103,693 + GFF3026 0.41 +0.5 103,694 - GFF3026 0.41 +0.0 103,694 - GFF3026 0.41 -0.4 103,694 - GFF3026 0.41 -0.4 103,694 - GFF3026 0.41 +0.1 103,777 + GFF3026 0.49 +0.1 104,048 - GFF3026 0.74 -0.2
Or see this region's nucleotide sequence