Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2879 and GFF2880 are separated by 148 nucleotides GFF2880 and GFF2881 are separated by 67 nucleotides
GFF2879 - Two-component hybrid sensor and regulator, at 466,985 to 470,410
GFF2879
GFF2880 - Urea ABC transporter, urea binding protein, at 470,559 to 471,836
GFF2880
GFF2881 - Urea ABC transporter, permease protein UrtB, at 471,904 to 472,818
GFF2881
Position (kb) 470
471
472 Strain fitness (log2 ratio) -1
0
1 at 469.843 kb on - strand, within GFF2879 at 470.022 kb on + strand, within GFF2879 at 470.023 kb on - strand, within GFF2879 at 470.187 kb on + strand at 470.298 kb on + strand at 470.346 kb on + strand at 470.347 kb on - strand at 470.347 kb on - strand at 470.459 kb on - strand at 470.459 kb on - strand at 470.459 kb on - strand at 470.464 kb on - strand at 470.497 kb on + strand at 471.024 kb on + strand, within GFF2880 at 471.024 kb on + strand, within GFF2880 at 471.025 kb on - strand, within GFF2880 at 471.025 kb on - strand, within GFF2880 at 471.039 kb on + strand, within GFF2880 at 471.039 kb on + strand, within GFF2880 at 471.040 kb on - strand, within GFF2880 at 471.040 kb on - strand, within GFF2880 at 471.040 kb on - strand, within GFF2880 at 471.072 kb on + strand, within GFF2880 at 471.072 kb on + strand, within GFF2880 at 471.106 kb on - strand, within GFF2880 at 471.168 kb on + strand, within GFF2880 at 471.249 kb on + strand, within GFF2880 at 471.250 kb on - strand, within GFF2880 at 471.357 kb on + strand, within GFF2880 at 471.483 kb on + strand, within GFF2880 at 471.484 kb on - strand, within GFF2880 at 471.484 kb on - strand, within GFF2880 at 471.544 kb on - strand, within GFF2880 at 472.124 kb on - strand, within GFF2881 at 472.124 kb on - strand, within GFF2881 at 472.207 kb on + strand, within GFF2881 at 472.208 kb on - strand, within GFF2881 at 472.208 kb on - strand, within GFF2881 at 472.609 kb on + strand, within GFF2881 at 472.610 kb on - strand, within GFF2881 at 472.610 kb on - strand, within GFF2881 at 472.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 469,843 - GFF2879 0.83 -0.1 470,022 + GFF2879 0.89 -0.2 470,023 - GFF2879 0.89 +0.4 470,187 + -0.1 470,298 + -0.3 470,346 + -1.1 470,347 - +1.2 470,347 - +0.5 470,459 - +0.1 470,459 - -0.0 470,459 - +0.3 470,464 - +0.2 470,497 + +0.6 471,024 + GFF2880 0.36 -1.1 471,024 + GFF2880 0.36 +0.2 471,025 - GFF2880 0.36 -0.3 471,025 - GFF2880 0.36 -0.2 471,039 + GFF2880 0.38 +0.1 471,039 + GFF2880 0.38 -0.0 471,040 - GFF2880 0.38 -1.2 471,040 - GFF2880 0.38 -0.1 471,040 - GFF2880 0.38 -0.1 471,072 + GFF2880 0.40 -1.0 471,072 + GFF2880 0.40 +0.1 471,106 - GFF2880 0.43 -0.9 471,168 + GFF2880 0.48 +1.5 471,249 + GFF2880 0.54 -0.3 471,250 - GFF2880 0.54 -0.7 471,357 + GFF2880 0.62 +0.0 471,483 + GFF2880 0.72 +0.0 471,484 - GFF2880 0.72 -0.8 471,484 - GFF2880 0.72 -0.2 471,544 - GFF2880 0.77 -0.1 472,124 - GFF2881 0.24 -0.7 472,124 - GFF2881 0.24 -0.1 472,207 + GFF2881 0.33 +0.9 472,208 - GFF2881 0.33 +0.0 472,208 - GFF2881 0.33 -0.1 472,609 + GFF2881 0.77 -1.1 472,610 - GFF2881 0.77 -0.1 472,610 - GFF2881 0.77 +0.6 472,818 - -0.3
Or see this region's nucleotide sequence