Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2652 and GFF2653 are separated by 1 nucleotides GFF2653 and GFF2654 overlap by 4 nucleotides GFF2654 and GFF2655 overlap by 4 nucleotides GFF2655 and GFF2656 overlap by 4 nucleotides
GFF2652 - Transcriptional regulator, MarR family, at 246,400 to 246,888
GFF2652
GFF2653 - Na(+) H(+) antiporter subunit G, at 246,890 to 247,291
GFF2653
GFF2654 - Na(+) H(+) antiporter subunit F, at 247,288 to 247,566
GFF2654
GFF2655 - Na(+) H(+) antiporter subunit E, at 247,563 to 248,054
GFF2655
GFF2656 - Na(+) H(+) antiporter subunit D, at 248,051 to 249,760
GFF2656
Position (kb) 247
248
249 Strain fitness (log2 ratio) -1
0
1 at 246.631 kb on + strand, within GFF2652 at 246.632 kb on - strand, within GFF2652 at 246.632 kb on - strand, within GFF2652 at 246.697 kb on + strand, within GFF2652 at 246.698 kb on - strand, within GFF2652 at 246.698 kb on - strand, within GFF2652 at 246.836 kb on - strand, within GFF2652 at 246.836 kb on - strand, within GFF2652 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.379 kb on + strand, within GFF2654 at 247.379 kb on + strand, within GFF2654 at 247.380 kb on - strand, within GFF2654 at 247.380 kb on - strand, within GFF2654 at 247.380 kb on - strand, within GFF2654 at 247.436 kb on + strand, within GFF2654 at 247.485 kb on - strand, within GFF2654 at 247.520 kb on + strand, within GFF2654 at 247.594 kb on + strand at 247.978 kb on + strand, within GFF2655 at 247.978 kb on + strand, within GFF2655 at 247.978 kb on + strand, within GFF2655 at 247.978 kb on + strand, within GFF2655 at 247.979 kb on - strand, within GFF2655 at 248.139 kb on + strand at 248.139 kb on + strand at 248.140 kb on - strand at 248.154 kb on + strand at 248.155 kb on - strand at 248.155 kb on - strand at 248.181 kb on + strand at 248.250 kb on + strand, within GFF2656 at 248.724 kb on + strand, within GFF2656 at 248.724 kb on + strand, within GFF2656 at 248.725 kb on - strand, within GFF2656 at 248.725 kb on - strand, within GFF2656 at 248.725 kb on - strand, within GFF2656 at 248.725 kb on - strand, within GFF2656 at 248.725 kb on - strand, within GFF2656 at 248.725 kb on - strand, within GFF2656 at 248.727 kb on + strand, within GFF2656 at 248.728 kb on - strand, within GFF2656 at 248.961 kb on + strand, within GFF2656 at 248.961 kb on + strand, within GFF2656 at 248.961 kb on + strand, within GFF2656 at 248.961 kb on + strand, within GFF2656 at 248.962 kb on - strand, within GFF2656 at 248.962 kb on - strand, within GFF2656 at 249.021 kb on + strand, within GFF2656 at 249.022 kb on - strand, within GFF2656
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 246,631 + GFF2652 0.47 +0.1 246,632 - GFF2652 0.47 +0.0 246,632 - GFF2652 0.47 -0.4 246,697 + GFF2652 0.61 -1.5 246,698 - GFF2652 0.61 -0.5 246,698 - GFF2652 0.61 -0.5 246,836 - GFF2652 0.89 -0.2 246,836 - GFF2652 0.89 -0.8 247,101 + GFF2653 0.52 -0.2 247,101 + GFF2653 0.52 -0.9 247,101 + GFF2653 0.52 -0.1 247,101 + GFF2653 0.52 -0.0 247,101 + GFF2653 0.52 -0.1 247,101 + GFF2653 0.52 +0.3 247,102 - GFF2653 0.53 +0.5 247,102 - GFF2653 0.53 -0.0 247,102 - GFF2653 0.53 -1.7 247,102 - GFF2653 0.53 -0.1 247,102 - GFF2653 0.53 +0.7 247,102 - GFF2653 0.53 -0.3 247,379 + GFF2654 0.33 +0.5 247,379 + GFF2654 0.33 -0.1 247,380 - GFF2654 0.33 +1.1 247,380 - GFF2654 0.33 -0.3 247,380 - GFF2654 0.33 +0.4 247,436 + GFF2654 0.53 -0.0 247,485 - GFF2654 0.71 +1.2 247,520 + GFF2654 0.83 -0.8 247,594 + +0.9 247,978 + GFF2655 0.84 -0.7 247,978 + GFF2655 0.84 +0.2 247,978 + GFF2655 0.84 +0.0 247,978 + GFF2655 0.84 +0.9 247,979 - GFF2655 0.85 +0.5 248,139 + +0.1 248,139 + -0.8 248,140 - +0.2 248,154 + +0.2 248,155 - -0.2 248,155 - -0.0 248,181 + -0.2 248,250 + GFF2656 0.12 -1.0 248,724 + GFF2656 0.39 +0.6 248,724 + GFF2656 0.39 -0.7 248,725 - GFF2656 0.39 -0.2 248,725 - GFF2656 0.39 -1.0 248,725 - GFF2656 0.39 -0.1 248,725 - GFF2656 0.39 -0.1 248,725 - GFF2656 0.39 +0.3 248,725 - GFF2656 0.39 -0.1 248,727 + GFF2656 0.40 -0.5 248,728 - GFF2656 0.40 -0.1 248,961 + GFF2656 0.53 -0.4 248,961 + GFF2656 0.53 -0.0 248,961 + GFF2656 0.53 +1.1 248,961 + GFF2656 0.53 -0.7 248,962 - GFF2656 0.53 +0.3 248,962 - GFF2656 0.53 +0.5 249,021 + GFF2656 0.57 -1.2 249,022 - GFF2656 0.57 +0.3
Or see this region's nucleotide sequence