Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2492

Experiment: Ying_sugar7 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2491 and GFF2492 are separated by 12 nucleotidesGFF2492 and GFF2493 overlap by 7 nucleotidesGFF2493 and GFF2494 are separated by 16 nucleotides GFF2491 - Extracellular protease precursor (EC 3.4.21.-), at 76,144 to 77,961 GFF2491 GFF2492 - hypothetical protein, at 77,974 to 78,717 GFF2492 GFF2493 - Biotin--protein ligase (EC 6.3.4.9, EC 6.3.4.10, EC 6.3.4.11, EC 6.3.4.15), at 78,711 to 79,514 GFF2493 GFF2494 - Proteins containing SET domain, at 79,531 to 80,073 GFF2494 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1at 77.065 kb on + strand, within GFF2491at 77.065 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.212 kb on + strand, within GFF2491at 77.213 kb on - strand, within GFF2491at 77.213 kb on - strand, within GFF2491at 77.213 kb on - strand, within GFF2491at 77.213 kb on - strand, within GFF2491at 77.287 kb on + strand, within GFF2491at 77.332 kb on + strand, within GFF2491at 77.332 kb on + strand, within GFF2491at 77.332 kb on + strand, within GFF2491at 77.332 kb on + strand, within GFF2491at 77.332 kb on + strand, within GFF2491at 77.332 kb on + strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.333 kb on - strand, within GFF2491at 77.338 kb on + strand, within GFF2491at 77.338 kb on + strand, within GFF2491at 77.339 kb on - strand, within GFF2491at 77.339 kb on - strand, within GFF2491at 77.339 kb on - strand, within GFF2491at 77.339 kb on - strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 78.071 kb on + strand, within GFF2492at 78.072 kb on - strand, within GFF2492at 78.072 kb on - strand, within GFF2492at 78.170 kb on + strand, within GFF2492at 78.170 kb on + strand, within GFF2492at 78.170 kb on + strand, within GFF2492at 78.170 kb on + strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.650 kb on + strandat 78.650 kb on - strandat 78.671 kb on + strandat 78.671 kb on + strandat 78.671 kb on + strandat 78.671 kb on + strandat 78.672 kb on - strandat 78.672 kb on - strandat 78.672 kb on - strandat 78.672 kb on - strandat 78.672 kb on - strandat 78.672 kb on - strandat 79.479 kb on + strandat 79.480 kb on - strandat 79.480 kb on - strandat 79.613 kb on + strand, within GFF2494at 79.614 kb on - strand, within GFF2494at 79.637 kb on + strand, within GFF2494at 79.638 kb on - strand, within GFF2494at 79.638 kb on - strand, within GFF2494at 79.638 kb on - strand, within GFF2494at 79.661 kb on + strand, within GFF2494at 79.661 kb on + strand, within GFF2494at 79.661 kb on + strand, within GFF2494at 79.662 kb on - strand, within GFF2494at 79.662 kb on - strand, within GFF2494at 79.667 kb on + strand, within GFF2494at 79.667 kb on + strand, within GFF2494at 79.667 kb on + strand, within GFF2494at 79.667 kb on + strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2
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77,065 + GFF2491 0.51 -0.1
77,065 + GFF2491 0.51 +0.1
77,212 + GFF2491 0.59 -0.3
77,212 + GFF2491 0.59 +1.5
77,212 + GFF2491 0.59 -0.3
77,212 + GFF2491 0.59 +0.2
77,212 + GFF2491 0.59 -0.2
77,212 + GFF2491 0.59 +1.2
77,212 + GFF2491 0.59 -0.2
77,213 - GFF2491 0.59 -0.6
77,213 - GFF2491 0.59 -0.2
77,213 - GFF2491 0.59 +1.1
77,213 - GFF2491 0.59 -0.6
77,287 + GFF2491 0.63 -0.0
77,332 + GFF2491 0.65 +0.1
77,332 + GFF2491 0.65 -1.3
77,332 + GFF2491 0.65 -0.2
77,332 + GFF2491 0.65 +0.3
77,332 + GFF2491 0.65 -0.2
77,332 + GFF2491 0.65 +0.3
77,333 - GFF2491 0.65 +1.2
77,333 - GFF2491 0.65 +0.1
77,333 - GFF2491 0.65 +0.1
77,333 - GFF2491 0.65 -0.5
77,333 - GFF2491 0.65 -0.2
77,333 - GFF2491 0.65 -1.4
77,333 - GFF2491 0.65 -0.4
77,333 - GFF2491 0.65 +0.5
77,333 - GFF2491 0.65 -1.2
77,333 - GFF2491 0.65 +0.0
77,333 - GFF2491 0.65 -0.4
77,333 - GFF2491 0.65 +0.2
77,333 - GFF2491 0.65 +0.5
77,338 + GFF2491 0.66 +0.3
77,338 + GFF2491 0.66 -0.4
77,339 - GFF2491 0.66 -0.5
77,339 - GFF2491 0.66 +0.6
77,339 - GFF2491 0.66 +0.7
77,339 - GFF2491 0.66 +0.3
77,773 + GFF2491 0.90 +0.4
77,773 + GFF2491 0.90 +0.1
77,773 + GFF2491 0.90 -0.4
77,773 + GFF2491 0.90 +0.6
77,773 + GFF2491 0.90 +0.2
77,773 + GFF2491 0.90 -0.3
77,773 + GFF2491 0.90 +1.6
77,773 + GFF2491 0.90 -0.2
77,773 + GFF2491 0.90 -0.4
77,773 + GFF2491 0.90 +0.1
77,773 + GFF2491 0.90 +0.3
77,773 + GFF2491 0.90 -0.2
77,773 + GFF2491 0.90 -0.4
77,773 + GFF2491 0.90 +0.3
77,773 + GFF2491 0.90 +0.7
77,773 + GFF2491 0.90 +1.0
77,773 + GFF2491 0.90 +0.7
77,774 - GFF2491 0.90 +0.2
77,774 - GFF2491 0.90 +0.5
77,774 - GFF2491 0.90 +0.1
77,774 - GFF2491 0.90 -1.2
77,774 - GFF2491 0.90 +1.0
77,774 - GFF2491 0.90 -0.5
77,774 - GFF2491 0.90 -1.7
77,774 - GFF2491 0.90 -1.3
77,774 - GFF2491 0.90 -0.3
77,774 - GFF2491 0.90 -0.1
77,774 - GFF2491 0.90 +0.0
77,774 - GFF2491 0.90 -0.1
77,774 - GFF2491 0.90 +0.5
77,774 - GFF2491 0.90 +0.9
77,774 - GFF2491 0.90 -0.6
77,774 - GFF2491 0.90 +0.2
77,774 - GFF2491 0.90 -0.3
78,071 + GFF2492 0.13 +0.1
78,072 - GFF2492 0.13 +0.2
78,072 - GFF2492 0.13 +0.8
78,170 + GFF2492 0.26 -0.5
78,170 + GFF2492 0.26 +1.2
78,170 + GFF2492 0.26 +0.3
78,170 + GFF2492 0.26 +0.2
78,171 - GFF2492 0.26 -0.2
78,171 - GFF2492 0.26 -0.3
78,171 - GFF2492 0.26 -0.1
78,171 - GFF2492 0.26 +0.1
78,171 - GFF2492 0.26 +0.2
78,293 + GFF2492 0.43 -0.1
78,293 + GFF2492 0.43 +0.8
78,293 + GFF2492 0.43 -0.5
78,293 + GFF2492 0.43 +0.0
78,293 + GFF2492 0.43 +0.3
78,293 + GFF2492 0.43 -0.8
78,294 - GFF2492 0.43 +0.7
78,294 - GFF2492 0.43 -0.1
78,294 - GFF2492 0.43 -1.0
78,294 - GFF2492 0.43 -0.5
78,294 - GFF2492 0.43 +0.3
78,294 - GFF2492 0.43 +0.1
78,294 - GFF2492 0.43 +0.5
78,294 - GFF2492 0.43 -0.6
78,650 + +0.9
78,650 - +0.1
78,671 + +0.4
78,671 + +0.3
78,671 + +0.5
78,671 + +0.3
78,672 - +0.3
78,672 - +0.8
78,672 - +0.0
78,672 - -0.7
78,672 - +0.1
78,672 - +0.2
79,479 + +0.0
79,480 - -0.0
79,480 - -0.3
79,613 + GFF2494 0.15 +0.3
79,614 - GFF2494 0.15 -0.3
79,637 + GFF2494 0.20 +0.6
79,638 - GFF2494 0.20 -0.2
79,638 - GFF2494 0.20 -0.1
79,638 - GFF2494 0.20 -1.8
79,661 + GFF2494 0.24 -0.4
79,661 + GFF2494 0.24 -0.3
79,661 + GFF2494 0.24 +0.7
79,662 - GFF2494 0.24 +0.2
79,662 - GFF2494 0.24 -0.4
79,667 + GFF2494 0.25 +0.4
79,667 + GFF2494 0.25 +0.4
79,667 + GFF2494 0.25 -0.3
79,667 + GFF2494 0.25 +0.9
79,668 - GFF2494 0.25 +0.8
79,668 - GFF2494 0.25 -0.0
79,668 - GFF2494 0.25 +0.5
79,668 - GFF2494 0.25 -0.2
79,668 - GFF2494 0.25 +0.3
79,668 - GFF2494 0.25 -0.7
79,668 - GFF2494 0.25 +0.2
79,668 - GFF2494 0.25 -0.5
79,668 - GFF2494 0.25 +0.7
79,668 - GFF2494 0.25 -1.5
79,668 - GFF2494 0.25 -0.4

Or see this region's nucleotide sequence