Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2472 and GFF2473 are separated by 8 nucleotides GFF2473 and GFF2474 are separated by 37 nucleotides GFF2474 and GFF2475 overlap by 4 nucleotides GFF2475 and GFF2476 are separated by 32 nucleotides
GFF2472 - TonB-dependent hemin , ferrichrome receptor, at 55,486 to 57,672
GFF2472
GFF2473 - hypothetical protein, at 57,681 to 58,007
GFF2473
GFF2474 - Hemin transport protein HmuS, at 58,045 to 59,115
GFF2474
GFF2475 - hypothetical protein, at 59,112 to 59,513
GFF2475
GFF2476 - Periplasmic hemin-binding protein, at 59,546 to 60,430
GFF2476
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 57.124 kb on + strand, within GFF2472 at 57.125 kb on - strand, within GFF2472 at 57.125 kb on - strand, within GFF2472 at 57.193 kb on + strand, within GFF2472 at 57.193 kb on + strand, within GFF2472 at 57.193 kb on + strand, within GFF2472 at 57.442 kb on + strand, within GFF2472 at 57.443 kb on - strand, within GFF2472 at 57.478 kb on + strand at 57.478 kb on + strand at 57.479 kb on - strand at 57.479 kb on - strand at 57.565 kb on + strand at 57.566 kb on - strand at 57.623 kb on - strand at 57.670 kb on + strand at 57.670 kb on + strand at 57.723 kb on + strand, within GFF2473 at 57.723 kb on + strand, within GFF2473 at 57.781 kb on - strand, within GFF2473 at 57.853 kb on + strand, within GFF2473 at 58.297 kb on + strand, within GFF2474 at 58.297 kb on + strand, within GFF2474 at 58.480 kb on + strand, within GFF2474 at 58.481 kb on - strand, within GFF2474 at 58.481 kb on - strand, within GFF2474 at 58.723 kb on + strand, within GFF2474 at 58.723 kb on + strand, within GFF2474 at 58.724 kb on - strand, within GFF2474 at 59.190 kb on + strand, within GFF2475 at 59.190 kb on + strand, within GFF2475 at 59.191 kb on - strand, within GFF2475 at 59.238 kb on + strand, within GFF2475 at 59.239 kb on - strand, within GFF2475 at 59.239 kb on - strand, within GFF2475 at 59.281 kb on - strand, within GFF2475 at 59.691 kb on - strand, within GFF2476 at 59.777 kb on + strand, within GFF2476 at 59.777 kb on + strand, within GFF2476 at 59.778 kb on - strand, within GFF2476 at 59.778 kb on - strand, within GFF2476
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 57,124 + GFF2472 0.75 -0.3 57,125 - GFF2472 0.75 -0.1 57,125 - GFF2472 0.75 -0.1 57,193 + GFF2472 0.78 +1.7 57,193 + GFF2472 0.78 -0.9 57,193 + GFF2472 0.78 -0.5 57,442 + GFF2472 0.89 +0.8 57,443 - GFF2472 0.89 +0.3 57,478 + -0.2 57,478 + -2.0 57,479 - -0.4 57,479 - -0.6 57,565 + -0.4 57,566 - +0.3 57,623 - -0.0 57,670 + -2.9 57,670 + -0.2 57,723 + GFF2473 0.13 +0.3 57,723 + GFF2473 0.13 +0.5 57,781 - GFF2473 0.31 -0.2 57,853 + GFF2473 0.53 +0.1 58,297 + GFF2474 0.24 -0.3 58,297 + GFF2474 0.24 -0.0 58,480 + GFF2474 0.41 -0.0 58,481 - GFF2474 0.41 -1.2 58,481 - GFF2474 0.41 -0.9 58,723 + GFF2474 0.63 -0.0 58,723 + GFF2474 0.63 -1.1 58,724 - GFF2474 0.63 -0.4 59,190 + GFF2475 0.19 +0.0 59,190 + GFF2475 0.19 +0.2 59,191 - GFF2475 0.20 -0.3 59,238 + GFF2475 0.31 -0.0 59,239 - GFF2475 0.32 -0.2 59,239 - GFF2475 0.32 +0.0 59,281 - GFF2475 0.42 +1.1 59,691 - GFF2476 0.16 +0.1 59,777 + GFF2476 0.26 +0.1 59,777 + GFF2476 0.26 +0.6 59,778 - GFF2476 0.26 -0.9 59,778 - GFF2476 0.26 -0.0
Or see this region's nucleotide sequence