Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2318

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
1,201,699	-		GFF2316	0.43	-0.2
1,201,699	-		GFF2316	0.43	+0.2
1,202,329	+				+0.3
1,202,329	+				+0.4
1,202,329	+				+0.5
1,202,423	+				+0.3
1,202,424	-				-0.2
1,202,424	-				-0.2
1,202,947	+		GFF2318	0.54	-0.9
1,202,947	+		GFF2318	0.54	+0.1
1,202,947	+		GFF2318	0.54	-1.2
1,202,947	+		GFF2318	0.54	+0.2
1,202,948	-		GFF2318	0.54	-1.1
1,202,948	-		GFF2318	0.54	-0.1
1,202,948	-		GFF2318	0.54	-0.1
1,202,948	-		GFF2318	0.54	+0.0
1,203,187	+		GFF2318	0.81	-0.7
1,203,188	-		GFF2318	0.81	+0.5
1,203,307	+				+0.1
1,203,361	+				-0.1
1,203,361	+				-0.3
1,203,361	+				-0.3
1,203,361	+				+0.6
1,203,362	-				+0.8
1,203,362	-				-0.0
1,203,427	+				-0.5
1,203,427	+				+0.1
1,203,427	+				-0.3
1,203,427	+				-0.3
1,203,428	-				-0.6
1,203,428	-				+0.4
1,203,439	+		GFF2319	0.11	-0.2
1,203,439	+		GFF2319	0.11	-2.2
1,203,440	-		GFF2319	0.11	-0.2
1,203,440	-		GFF2319	0.11	+0.1
1,203,649	+		GFF2319	0.40	-0.1
1,203,650	-		GFF2319	0.40	+0.1
1,203,650	-		GFF2319	0.40	-1.1
1,203,650	-		GFF2319	0.40	-0.3
1,203,650	-		GFF2319	0.40	-0.6
1,203,650	-		GFF2319	0.40	-0.4
1,203,650	-		GFF2319	0.40	-1.0
1,203,650	-		GFF2319	0.40	-1.1
1,203,650	-		GFF2319	0.40	-0.1
1,203,655	+		GFF2319	0.40	+0.0
1,203,655	+		GFF2319	0.40	-0.1
1,203,655	+		GFF2319	0.40	-1.1
1,203,655	+		GFF2319	0.40	-0.4
1,203,655	+		GFF2319	0.40	+0.0
1,203,655	+		GFF2319	0.40	+0.5
1,203,655	+		GFF2319	0.40	-0.1
1,203,655	+		GFF2319	0.40	-0.5
1,203,655	+		GFF2319	0.40	+0.2
1,203,655	+		GFF2319	0.40	-0.1
1,203,655	+		GFF2319	0.40	+0.4
1,203,656	-		GFF2319	0.41	+0.6
1,203,656	-		GFF2319	0.41	+0.2
1,203,656	-		GFF2319	0.41	+0.5
1,203,656	-		GFF2319	0.41	-0.8
1,203,656	-		GFF2319	0.41	-0.1
1,203,656	-		GFF2319	0.41	-0.7
1,203,656	-		GFF2319	0.41	+0.5
1,203,656	-		GFF2319	0.41	+0.1
1,203,656	-		GFF2319	0.41	-1.5
1,203,656	-		GFF2319	0.41	+0.7
1,203,656	-		GFF2319	0.41	+0.9
1,203,656	-		GFF2319	0.41	+0.1
1,203,656	-		GFF2319	0.41	-0.4
1,203,938	-		GFF2319	0.79	-1.1
1,203,938	-		GFF2319	0.79	-0.1
1,204,015	+		GFF2319	0.90	-0.6
1,204,015	+		GFF2319	0.90	-0.2
1,204,015	+		GFF2319	0.90	-0.5
1,204,015	+		GFF2319	0.90	-0.9
1,204,015	+		GFF2319	0.90	+0.1
1,204,015	+		GFF2319	0.90	-0.1
1,204,016	-				+0.2
1,204,016	-				-0.4
1,204,016	-				+0.2
1,204,016	-				-0.0
1,204,016	-				-0.1
1,204,016	-				+0.3
1,204,016	-				+0.0
1,204,016	-				-1.4
1,204,016	-				+0.4
1,204,112	+				-0.4
1,204,113	-				+0.3
1,204,113	-				+0.6
1,204,150	+				-0.5
1,204,150	+				+0.3
1,204,150	+				+0.0
1,204,150	+				+0.6
1,204,150	+				-0.1
1,204,150	+				-0.3
1,204,150	+				+0.1
1,204,150	+				-0.2
1,204,151	-				-1.1
1,204,244	-				+1.3
1,204,291	+		GFF2320	0.13	-0.4
1,204,291	+		GFF2320	0.13	+0.4
1,204,291	+		GFF2320	0.13	-0.4
1,204,291	+		GFF2320	0.13	+0.4
1,204,291	+		GFF2320	0.13	+0.2
1,204,291	+		GFF2320	0.13	-0.2
1,204,291	+		GFF2320	0.13	-0.2
1,204,292	-		GFF2320	0.13	-0.4
1,204,292	-		GFF2320	0.13	+0.5
1,204,292	-		GFF2320	0.13	+1.1
1,204,292	-		GFF2320	0.13	+0.9
1,204,292	-		GFF2320	0.13	-0.1
1,204,292	-		GFF2320	0.13	-0.1
1,204,292	-		GFF2320	0.13	-0.8