Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2250 and GFF2251 are separated by 60 nucleotides GFF2251 and GFF2252 are separated by 83 nucleotides GFF2252 and GFF2253 overlap by 14 nucleotides GFF2253 and GFF2254 are separated by 3 nucleotides
GFF2250 - HipA protein, at 1,133,801 to 1,135,153
GFF2250
GFF2251 - Transcriptional regulator, TetR family, at 1,135,214 to 1,135,861
GFF2251
GFF2252 - FIG01094124: hypothetical protein, at 1,135,945 to 1,136,997
GFF2252
GFF2253 - acetyltransferase, GNAT family, at 1,136,984 to 1,137,817
GFF2253
GFF2254 - 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7), at 1,137,821 to 1,138,885
GFF2254
Position (kb) 1135
1136
1137 Strain fitness (log2 ratio) -1
0
1 at 1135.177 kb on + strand at 1135.178 kb on - strand at 1135.379 kb on + strand, within GFF2251 at 1135.379 kb on + strand, within GFF2251 at 1135.379 kb on + strand, within GFF2251 at 1135.380 kb on - strand, within GFF2251 at 1135.380 kb on - strand, within GFF2251 at 1135.380 kb on - strand, within GFF2251 at 1135.385 kb on + strand, within GFF2251 at 1135.385 kb on + strand, within GFF2251 at 1135.385 kb on + strand, within GFF2251 at 1135.385 kb on + strand, within GFF2251 at 1135.386 kb on - strand, within GFF2251 at 1135.433 kb on + strand, within GFF2251 at 1135.433 kb on + strand, within GFF2251 at 1135.433 kb on + strand, within GFF2251 at 1135.434 kb on - strand, within GFF2251 at 1135.527 kb on - strand, within GFF2251 at 1135.712 kb on + strand, within GFF2251 at 1135.712 kb on + strand, within GFF2251 at 1135.712 kb on + strand, within GFF2251 at 1135.712 kb on + strand, within GFF2251 at 1135.712 kb on + strand, within GFF2251 at 1135.712 kb on + strand, within GFF2251 at 1135.712 kb on + strand, within GFF2251 at 1135.713 kb on - strand, within GFF2251 at 1135.713 kb on - strand, within GFF2251 at 1135.713 kb on - strand, within GFF2251 at 1135.713 kb on - strand, within GFF2251 at 1135.736 kb on + strand, within GFF2251 at 1135.736 kb on + strand, within GFF2251 at 1135.736 kb on + strand, within GFF2251 at 1135.737 kb on - strand, within GFF2251 at 1135.814 kb on + strand at 1135.907 kb on + strand at 1135.907 kb on + strand at 1135.907 kb on + strand at 1135.908 kb on - strand at 1135.908 kb on - strand at 1135.908 kb on - strand at 1135.908 kb on - strand at 1136.419 kb on + strand, within GFF2252 at 1136.525 kb on - strand, within GFF2252 at 1136.525 kb on - strand, within GFF2252 at 1136.525 kb on - strand, within GFF2252 at 1136.573 kb on - strand, within GFF2252 at 1136.573 kb on - strand, within GFF2252 at 1136.591 kb on - strand, within GFF2252 at 1136.602 kb on + strand, within GFF2252 at 1136.602 kb on + strand, within GFF2252 at 1136.603 kb on - strand, within GFF2252 at 1136.603 kb on - strand, within GFF2252 at 1137.176 kb on + strand, within GFF2253 at 1137.332 kb on + strand, within GFF2253 at 1137.332 kb on + strand, within GFF2253 at 1137.953 kb on + strand, within GFF2254 at 1137.954 kb on - strand, within GFF2254 at 1137.956 kb on + strand, within GFF2254 at 1137.956 kb on + strand, within GFF2254
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 1,135,177 + -0.4 1,135,178 - +0.6 1,135,379 + GFF2251 0.25 -1.2 1,135,379 + GFF2251 0.25 -0.4 1,135,379 + GFF2251 0.25 -1.1 1,135,380 - GFF2251 0.26 +0.2 1,135,380 - GFF2251 0.26 +0.0 1,135,380 - GFF2251 0.26 -1.2 1,135,385 + GFF2251 0.26 -0.1 1,135,385 + GFF2251 0.26 +0.3 1,135,385 + GFF2251 0.26 -1.1 1,135,385 + GFF2251 0.26 -0.1 1,135,386 - GFF2251 0.27 +0.1 1,135,433 + GFF2251 0.34 -0.5 1,135,433 + GFF2251 0.34 +0.0 1,135,433 + GFF2251 0.34 -0.9 1,135,434 - GFF2251 0.34 -0.4 1,135,527 - GFF2251 0.48 -0.7 1,135,712 + GFF2251 0.77 -0.4 1,135,712 + GFF2251 0.77 -0.4 1,135,712 + GFF2251 0.77 -0.5 1,135,712 + GFF2251 0.77 -1.2 1,135,712 + GFF2251 0.77 -0.3 1,135,712 + GFF2251 0.77 -0.3 1,135,712 + GFF2251 0.77 -0.1 1,135,713 - GFF2251 0.77 -0.5 1,135,713 - GFF2251 0.77 -1.0 1,135,713 - GFF2251 0.77 -0.6 1,135,713 - GFF2251 0.77 -1.2 1,135,736 + GFF2251 0.81 +1.5 1,135,736 + GFF2251 0.81 -0.4 1,135,736 + GFF2251 0.81 -1.6 1,135,737 - GFF2251 0.81 -0.3 1,135,814 + +0.8 1,135,907 + -1.1 1,135,907 + -0.2 1,135,907 + +0.4 1,135,908 - -0.2 1,135,908 - -0.7 1,135,908 - -0.2 1,135,908 - -0.0 1,136,419 + GFF2252 0.45 +0.2 1,136,525 - GFF2252 0.55 +1.5 1,136,525 - GFF2252 0.55 -0.5 1,136,525 - GFF2252 0.55 -0.2 1,136,573 - GFF2252 0.60 +0.8 1,136,573 - GFF2252 0.60 +0.5 1,136,591 - GFF2252 0.61 +0.0 1,136,602 + GFF2252 0.62 -0.4 1,136,602 + GFF2252 0.62 +0.4 1,136,603 - GFF2252 0.62 -0.3 1,136,603 - GFF2252 0.62 -0.8 1,137,176 + GFF2253 0.23 +0.2 1,137,332 + GFF2253 0.42 -0.2 1,137,332 + GFF2253 0.42 -0.4 1,137,953 + GFF2254 0.12 +0.2 1,137,954 - GFF2254 0.12 -0.2 1,137,956 + GFF2254 0.13 +0.6 1,137,956 + GFF2254 0.13 -0.8
Or see this region's nucleotide sequence