Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF204 and GFF205 are separated by 25 nucleotides GFF205 and GFF206 overlap by 14 nucleotides
GFF204 - Transcriptional regulator, LysR family, at 220,984 to 221,928
GFF204
GFF205 - ABC transporter ATP-binding protein, at 221,954 to 223,498
GFF205
GFF206 - Nucleoside ABC transporter, permease protein 1, at 223,485 to 224,540
GFF206
Position (kb) 221
222
223
224 Strain fitness (log2 ratio) -2
-1
0
1 at 220.973 kb on - strand at 220.983 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.991 kb on - strand at 220.991 kb on - strand at 220.991 kb on - strand at 220.991 kb on - strand at 220.991 kb on - strand at 220.991 kb on - strand at 220.991 kb on - strand at 220.991 kb on - strand at 221.092 kb on + strand, within GFF204 at 221.093 kb on - strand, within GFF204 at 221.093 kb on - strand, within GFF204 at 221.093 kb on - strand, within GFF204 at 221.312 kb on - strand, within GFF204 at 221.312 kb on - strand, within GFF204 at 221.818 kb on + strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.821 kb on + strand, within GFF204 at 221.821 kb on + strand, within GFF204 at 221.821 kb on + strand, within GFF204 at 221.821 kb on + strand, within GFF204 at 221.822 kb on - strand, within GFF204 at 221.995 kb on - strand at 222.108 kb on - strand at 222.108 kb on - strand at 222.108 kb on - strand at 222.527 kb on + strand, within GFF205 at 222.527 kb on + strand, within GFF205 at 223.103 kb on + strand, within GFF205 at 223.103 kb on + strand, within GFF205 at 223.103 kb on + strand, within GFF205 at 223.104 kb on - strand, within GFF205 at 223.530 kb on + strand at 223.531 kb on - strand at 223.653 kb on + strand, within GFF206 at 223.761 kb on + strand, within GFF206 at 223.761 kb on + strand, within GFF206 at 223.761 kb on + strand, within GFF206 at 223.762 kb on - strand, within GFF206 at 223.762 kb on - strand, within GFF206 at 223.762 kb on - strand, within GFF206 at 223.762 kb on - strand, within GFF206 at 223.944 kb on + strand, within GFF206 at 223.945 kb on - strand, within GFF206 at 224.004 kb on + strand, within GFF206 at 224.005 kb on - strand, within GFF206 at 224.139 kb on + strand, within GFF206 at 224.304 kb on + strand, within GFF206 at 224.304 kb on + strand, within GFF206 at 224.406 kb on + strand, within GFF206 at 224.406 kb on + strand, within GFF206
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 220,973 - -0.0 220,983 + +0.2 220,990 + -0.2 220,990 + +0.2 220,990 + -0.6 220,990 + -0.3 220,990 + -0.2 220,990 + +0.7 220,990 + +0.1 220,990 + -0.6 220,990 + -0.1 220,991 - -1.7 220,991 - -1.0 220,991 - +0.5 220,991 - -0.9 220,991 - +0.5 220,991 - +0.3 220,991 - +0.2 220,991 - -0.9 221,092 + GFF204 0.11 -0.5 221,093 - GFF204 0.12 +0.6 221,093 - GFF204 0.12 +0.0 221,093 - GFF204 0.12 -0.3 221,312 - GFF204 0.35 +0.2 221,312 - GFF204 0.35 +0.7 221,818 + GFF204 0.88 -2.0 221,819 - GFF204 0.88 -2.1 221,819 - GFF204 0.88 -0.5 221,819 - GFF204 0.88 -0.1 221,819 - GFF204 0.88 -0.7 221,819 - GFF204 0.88 +0.8 221,819 - GFF204 0.88 +0.1 221,819 - GFF204 0.88 +0.6 221,821 + GFF204 0.89 +0.3 221,821 + GFF204 0.89 -0.1 221,821 + GFF204 0.89 -0.5 221,821 + GFF204 0.89 -0.0 221,822 - GFF204 0.89 -0.3 221,995 - +0.5 222,108 - +0.0 222,108 - -0.2 222,108 - -1.3 222,527 + GFF205 0.37 +0.2 222,527 + GFF205 0.37 +0.3 223,103 + GFF205 0.74 -0.8 223,103 + GFF205 0.74 +0.1 223,103 + GFF205 0.74 -0.1 223,104 - GFF205 0.74 -0.7 223,530 + -0.8 223,531 - -0.8 223,653 + GFF206 0.16 +0.6 223,761 + GFF206 0.26 -0.5 223,761 + GFF206 0.26 -0.1 223,761 + GFF206 0.26 -0.8 223,762 - GFF206 0.26 +0.4 223,762 - GFF206 0.26 +0.3 223,762 - GFF206 0.26 -0.1 223,762 - GFF206 0.26 -0.0 223,944 + GFF206 0.43 +0.9 223,945 - GFF206 0.44 +0.1 224,004 + GFF206 0.49 +0.4 224,005 - GFF206 0.49 +0.3 224,139 + GFF206 0.62 +0.4 224,304 + GFF206 0.78 +0.5 224,304 + GFF206 0.78 +0.4 224,406 + GFF206 0.87 -0.3 224,406 + GFF206 0.87 +0.2
Or see this region's nucleotide sequence