Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1960 and GFF1961 overlap by 9 nucleotides GFF1961 and GFF1962 are separated by 140 nucleotides GFF1962 and GFF1963 are separated by 83 nucleotides
GFF1960 - Cell division protein FtsH (EC 3.4.24.-), at 833,027 to 835,327
GFF1960
GFF1961 - hypothetical protein, at 835,319 to 835,456
GFF1961
GFF1962 - Threonine dehydratase (EC 4.3.1.19), at 835,597 to 836,796
GFF1962
GFF1963 - Small-conductance mechanosensitive channel, at 836,880 to 838,340
GFF1963
Position (kb) 835
836
837 Strain fitness (log2 ratio) -2
-1
0
1
2 at 834.598 kb on - strand, within GFF1960 at 834.777 kb on + strand, within GFF1960 at 834.838 kb on - strand, within GFF1960 at 834.838 kb on - strand, within GFF1960 at 834.855 kb on + strand, within GFF1960 at 834.856 kb on - strand, within GFF1960 at 834.856 kb on - strand, within GFF1960 at 835.014 kb on + strand, within GFF1960 at 835.014 kb on + strand, within GFF1960 at 835.216 kb on + strand at 835.216 kb on + strand at 835.217 kb on - strand at 835.492 kb on + strand at 835.492 kb on + strand at 835.493 kb on - strand at 835.525 kb on + strand at 835.526 kb on - strand at 835.526 kb on - strand at 835.732 kb on + strand, within GFF1962 at 835.732 kb on + strand, within GFF1962 at 835.732 kb on + strand, within GFF1962 at 835.733 kb on - strand, within GFF1962 at 835.733 kb on - strand, within GFF1962 at 835.849 kb on + strand, within GFF1962 at 835.850 kb on - strand, within GFF1962 at 835.850 kb on - strand, within GFF1962 at 835.850 kb on - strand, within GFF1962 at 836.033 kb on - strand, within GFF1962 at 836.033 kb on - strand, within GFF1962 at 836.033 kb on - strand, within GFF1962 at 836.874 kb on + strand at 836.875 kb on - strand at 836.875 kb on - strand at 836.875 kb on - strand at 836.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 834,598 - GFF1960 0.68 -0.3 834,777 + GFF1960 0.76 -0.4 834,838 - GFF1960 0.79 -0.4 834,838 - GFF1960 0.79 -0.3 834,855 + GFF1960 0.79 -0.6 834,856 - GFF1960 0.79 +0.6 834,856 - GFF1960 0.79 -0.9 835,014 + GFF1960 0.86 -1.0 835,014 + GFF1960 0.86 -1.1 835,216 + -2.0 835,216 + -0.5 835,217 - -1.2 835,492 + +0.1 835,492 + -0.3 835,493 - +0.1 835,525 + +1.0 835,526 - +0.1 835,526 - +0.7 835,732 + GFF1962 0.11 +0.2 835,732 + GFF1962 0.11 +0.1 835,732 + GFF1962 0.11 +0.6 835,733 - GFF1962 0.11 +0.2 835,733 - GFF1962 0.11 +0.7 835,849 + GFF1962 0.21 +0.7 835,850 - GFF1962 0.21 -0.2 835,850 - GFF1962 0.21 +0.0 835,850 - GFF1962 0.21 +1.9 836,033 - GFF1962 0.36 +0.3 836,033 - GFF1962 0.36 +0.3 836,033 - GFF1962 0.36 +0.5 836,874 + +0.1 836,875 - +0.9 836,875 - +0.1 836,875 - -0.3 836,875 - +0.2
Or see this region's nucleotide sequence