Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1781

Experiment: Ying_sugar7 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1778 and GFF1779 overlap by 4 nucleotidesGFF1779 and GFF1780 are separated by 12 nucleotidesGFF1780 and GFF1781 overlap by 1 nucleotidesGFF1781 and GFF1782 are separated by 22 nucleotidesGFF1782 and GFF1783 are separated by 71 nucleotides GFF1778 - ATP-dependent DNA helicase Rep, at 642,595 to 644,673 GFF1778 GFF1779 - hypothetical protein, at 644,670 to 645,167 GFF1779 GFF1780 - hypothetical protein, at 645,180 to 645,431 GFF1780 GFF1781 - TRAP-type C4-dicarboxylate transport system, large permease component, at 645,431 to 646,714 GFF1781 GFF1782 - TRAP-type C4-dicarboxylate transport system, small permease component, at 646,737 to 647,252 GFF1782 GFF1783 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 647,324 to 648,310 GFF1783 Position (kb) 645 646 647Strain fitness (log2 ratio) -1 0 1at 644.443 kb on + strand, within GFF1778at 644.443 kb on + strand, within GFF1778at 644.443 kb on + strand, within GFF1778at 644.443 kb on + strand, within GFF1778at 644.444 kb on - strand, within GFF1778at 644.444 kb on - strand, within GFF1778at 644.805 kb on + strand, within GFF1779at 644.806 kb on - strand, within GFF1779at 644.901 kb on + strand, within GFF1779at 645.281 kb on - strand, within GFF1780at 645.839 kb on + strand, within GFF1781at 645.840 kb on - strand, within GFF1781at 645.840 kb on - strand, within GFF1781at 645.946 kb on - strand, within GFF1781at 645.946 kb on - strand, within GFF1781at 645.946 kb on - strand, within GFF1781at 645.972 kb on + strand, within GFF1781at 645.972 kb on + strand, within GFF1781at 645.972 kb on + strand, within GFF1781at 645.972 kb on + strand, within GFF1781at 645.972 kb on + strand, within GFF1781at 645.972 kb on + strand, within GFF1781at 645.972 kb on + strand, within GFF1781at 645.973 kb on - strand, within GFF1781at 645.973 kb on - strand, within GFF1781at 645.973 kb on - strand, within GFF1781at 645.973 kb on - strand, within GFF1781at 645.973 kb on - strand, within GFF1781at 646.242 kb on + strand, within GFF1781at 646.243 kb on - strand, within GFF1781at 646.243 kb on - strand, within GFF1781at 646.314 kb on + strand, within GFF1781at 646.327 kb on - strand, within GFF1781at 646.606 kb on - strandat 646.802 kb on - strand, within GFF1782at 646.802 kb on - strand, within GFF1782at 646.802 kb on - strand, within GFF1782at 646.864 kb on + strand, within GFF1782at 646.864 kb on + strand, within GFF1782at 646.865 kb on - strand, within GFF1782at 646.865 kb on - strand, within GFF1782at 646.865 kb on - strand, within GFF1782at 646.924 kb on + strand, within GFF1782at 646.924 kb on + strand, within GFF1782at 646.924 kb on + strand, within GFF1782at 646.925 kb on - strand, within GFF1782at 646.925 kb on - strand, within GFF1782at 646.925 kb on - strand, within GFF1782at 646.925 kb on - strand, within GFF1782at 646.939 kb on + strand, within GFF1782at 646.939 kb on + strand, within GFF1782at 646.939 kb on + strand, within GFF1782at 646.940 kb on - strand, within GFF1782at 647.364 kb on + strandat 647.365 kb on - strandat 647.376 kb on + strandat 647.376 kb on + strandat 647.376 kb on + strandat 647.376 kb on + strandat 647.377 kb on - strandat 647.377 kb on - strandat 647.377 kb on - strandat 647.377 kb on - strandat 647.385 kb on + strandat 647.385 kb on + strandat 647.385 kb on + strandat 647.386 kb on - strandat 647.386 kb on - strandat 647.386 kb on - strandat 647.604 kb on + strand, within GFF1783at 647.604 kb on + strand, within GFF1783at 647.604 kb on + strand, within GFF1783at 647.604 kb on + strand, within GFF1783at 647.605 kb on - strand, within GFF1783at 647.605 kb on - strand, within GFF1783at 647.605 kb on - strand, within GFF1783at 647.605 kb on - strand, within GFF1783at 647.605 kb on - strand, within GFF1783

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2
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644,443 + GFF1778 0.89 +1.0
644,443 + GFF1778 0.89 -1.0
644,443 + GFF1778 0.89 +0.4
644,443 + GFF1778 0.89 +0.8
644,444 - GFF1778 0.89 -0.4
644,444 - GFF1778 0.89 -0.2
644,805 + GFF1779 0.27 +0.9
644,806 - GFF1779 0.27 -0.5
644,901 + GFF1779 0.46 -0.1
645,281 - GFF1780 0.40 -0.1
645,839 + GFF1781 0.32 +0.2
645,840 - GFF1781 0.32 +0.5
645,840 - GFF1781 0.32 +0.7
645,946 - GFF1781 0.40 -0.3
645,946 - GFF1781 0.40 +0.9
645,946 - GFF1781 0.40 +0.1
645,972 + GFF1781 0.42 +0.2
645,972 + GFF1781 0.42 +0.5
645,972 + GFF1781 0.42 +0.2
645,972 + GFF1781 0.42 -0.1
645,972 + GFF1781 0.42 +0.1
645,972 + GFF1781 0.42 +0.7
645,972 + GFF1781 0.42 +0.3
645,973 - GFF1781 0.42 -0.4
645,973 - GFF1781 0.42 -1.2
645,973 - GFF1781 0.42 +0.3
645,973 - GFF1781 0.42 +0.1
645,973 - GFF1781 0.42 +0.2
646,242 + GFF1781 0.63 +0.6
646,243 - GFF1781 0.63 +0.7
646,243 - GFF1781 0.63 -1.3
646,314 + GFF1781 0.69 +0.7
646,327 - GFF1781 0.70 +0.1
646,606 - -1.1
646,802 - GFF1782 0.13 -0.1
646,802 - GFF1782 0.13 -0.3
646,802 - GFF1782 0.13 +1.2
646,864 + GFF1782 0.25 -0.3
646,864 + GFF1782 0.25 -0.9
646,865 - GFF1782 0.25 -0.1
646,865 - GFF1782 0.25 +0.0
646,865 - GFF1782 0.25 +0.3
646,924 + GFF1782 0.36 +0.5
646,924 + GFF1782 0.36 -0.2
646,924 + GFF1782 0.36 -0.0
646,925 - GFF1782 0.36 +0.1
646,925 - GFF1782 0.36 -0.0
646,925 - GFF1782 0.36 -0.6
646,925 - GFF1782 0.36 -0.5
646,939 + GFF1782 0.39 +0.4
646,939 + GFF1782 0.39 +0.5
646,939 + GFF1782 0.39 -0.5
646,940 - GFF1782 0.39 -0.5
647,364 + -1.6
647,365 - -0.6
647,376 + +0.4
647,376 + -0.1
647,376 + +0.8
647,376 + -0.2
647,377 - -0.1
647,377 - +0.4
647,377 - +0.6
647,377 - +0.2
647,385 + -0.1
647,385 + +0.2
647,385 + -0.8
647,386 - -0.5
647,386 - +0.3
647,386 - -0.6
647,604 + GFF1783 0.28 -0.9
647,604 + GFF1783 0.28 -0.2
647,604 + GFF1783 0.28 -0.1
647,604 + GFF1783 0.28 -1.5
647,605 - GFF1783 0.28 +0.5
647,605 - GFF1783 0.28 -0.7
647,605 - GFF1783 0.28 -1.3
647,605 - GFF1783 0.28 +0.8
647,605 - GFF1783 0.28 -0.3

Or see this region's nucleotide sequence