Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1722

Experiment: Ying_sugar7 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1721 and GFF1722 are separated by 21 nucleotidesGFF1722 and GFF1723 are separated by 11 nucleotides GFF1721 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 578,218 to 579,348 GFF1721 GFF1722 - Short-chain dehydrogenase/reductase SDR, at 579,370 to 580,038 GFF1722 GFF1723 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 580,050 to 581,234 GFF1723 Position (kb) 579 580 581Strain fitness (log2 ratio) -1 0 1at 578.565 kb on - strand, within GFF1721at 578.565 kb on - strand, within GFF1721at 578.777 kb on + strand, within GFF1721at 578.777 kb on + strand, within GFF1721at 578.777 kb on + strand, within GFF1721at 578.777 kb on + strand, within GFF1721at 578.778 kb on - strand, within GFF1721at 578.778 kb on - strand, within GFF1721at 578.778 kb on - strand, within GFF1721at 578.912 kb on + strand, within GFF1721at 578.912 kb on + strand, within GFF1721at 578.912 kb on + strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 578.913 kb on - strand, within GFF1721at 579.054 kb on - strand, within GFF1721at 579.158 kb on + strand, within GFF1721at 579.158 kb on + strand, within GFF1721at 579.158 kb on + strand, within GFF1721at 579.159 kb on - strand, within GFF1721at 579.159 kb on - strand, within GFF1721at 579.159 kb on - strand, within GFF1721at 579.159 kb on - strand, within GFF1721at 579.203 kb on + strand, within GFF1721at 579.204 kb on - strand, within GFF1721at 579.204 kb on - strand, within GFF1721at 579.204 kb on - strand, within GFF1721at 579.351 kb on - strandat 579.551 kb on + strand, within GFF1722at 579.551 kb on + strand, within GFF1722at 579.552 kb on - strand, within GFF1722at 579.605 kb on + strand, within GFF1722at 579.812 kb on + strand, within GFF1722at 579.812 kb on + strand, within GFF1722at 579.812 kb on + strand, within GFF1722at 579.812 kb on + strand, within GFF1722at 579.812 kb on + strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 579.813 kb on - strand, within GFF1722at 580.362 kb on - strand, within GFF1723at 580.587 kb on + strand, within GFF1723at 580.723 kb on + strand, within GFF1723at 580.723 kb on + strand, within GFF1723at 580.723 kb on + strand, within GFF1723at 580.723 kb on + strand, within GFF1723at 580.723 kb on + strand, within GFF1723at 580.723 kb on + strand, within GFF1723at 580.723 kb on + strand, within GFF1723at 580.724 kb on + strand, within GFF1723at 580.724 kb on - strand, within GFF1723at 580.724 kb on - strand, within GFF1723at 580.724 kb on - strand, within GFF1723at 580.724 kb on - strand, within GFF1723at 580.775 kb on - strand, within GFF1723at 580.775 kb on - strand, within GFF1723at 580.775 kb on - strand, within GFF1723at 580.775 kb on - strand, within GFF1723at 580.810 kb on + strand, within GFF1723at 580.810 kb on + strand, within GFF1723at 580.811 kb on - strand, within GFF1723at 580.811 kb on - strand, within GFF1723at 580.861 kb on + strand, within GFF1723at 580.861 kb on + strand, within GFF1723at 580.862 kb on - strand, within GFF1723at 580.862 kb on - strand, within GFF1723

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2
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578,565 - GFF1721 0.31 -0.1
578,565 - GFF1721 0.31 +0.1
578,777 + GFF1721 0.49 -0.8
578,777 + GFF1721 0.49 +1.1
578,777 + GFF1721 0.49 -0.3
578,777 + GFF1721 0.49 +0.9
578,778 - GFF1721 0.50 -0.5
578,778 - GFF1721 0.50 +0.1
578,778 - GFF1721 0.50 -0.3
578,912 + GFF1721 0.61 +0.1
578,912 + GFF1721 0.61 -0.2
578,912 + GFF1721 0.61 -0.1
578,913 - GFF1721 0.61 -0.6
578,913 - GFF1721 0.61 +0.2
578,913 - GFF1721 0.61 +0.6
578,913 - GFF1721 0.61 -0.2
578,913 - GFF1721 0.61 +0.8
578,913 - GFF1721 0.61 +0.5
578,913 - GFF1721 0.61 +0.6
578,913 - GFF1721 0.61 -1.1
579,054 - GFF1721 0.74 +0.3
579,158 + GFF1721 0.83 +0.6
579,158 + GFF1721 0.83 +1.1
579,158 + GFF1721 0.83 -0.3
579,159 - GFF1721 0.83 -0.7
579,159 - GFF1721 0.83 -0.2
579,159 - GFF1721 0.83 +0.8
579,159 - GFF1721 0.83 +0.2
579,203 + GFF1721 0.87 +0.2
579,204 - GFF1721 0.87 +0.6
579,204 - GFF1721 0.87 +0.4
579,204 - GFF1721 0.87 -0.4
579,351 - +0.1
579,551 + GFF1722 0.27 +0.1
579,551 + GFF1722 0.27 +0.6
579,552 - GFF1722 0.27 +0.4
579,605 + GFF1722 0.35 +0.5
579,812 + GFF1722 0.66 +0.1
579,812 + GFF1722 0.66 +0.3
579,812 + GFF1722 0.66 +0.0
579,812 + GFF1722 0.66 +0.1
579,812 + GFF1722 0.66 -0.8
579,813 - GFF1722 0.66 -0.3
579,813 - GFF1722 0.66 +0.1
579,813 - GFF1722 0.66 +0.7
579,813 - GFF1722 0.66 +0.6
579,813 - GFF1722 0.66 -0.3
579,813 - GFF1722 0.66 +0.3
579,813 - GFF1722 0.66 -1.4
579,813 - GFF1722 0.66 +0.5
580,362 - GFF1723 0.26 -1.0
580,587 + GFF1723 0.45 -0.4
580,723 + GFF1723 0.57 -0.1
580,723 + GFF1723 0.57 +0.0
580,723 + GFF1723 0.57 -0.2
580,723 + GFF1723 0.57 -0.3
580,723 + GFF1723 0.57 +0.0
580,723 + GFF1723 0.57 -0.0
580,723 + GFF1723 0.57 -0.2
580,724 + GFF1723 0.57 -0.3
580,724 - GFF1723 0.57 +0.2
580,724 - GFF1723 0.57 -0.0
580,724 - GFF1723 0.57 -0.5
580,724 - GFF1723 0.57 -0.4
580,775 - GFF1723 0.61 +0.5
580,775 - GFF1723 0.61 -0.3
580,775 - GFF1723 0.61 -0.4
580,775 - GFF1723 0.61 +0.4
580,810 + GFF1723 0.64 -0.3
580,810 + GFF1723 0.64 -0.0
580,811 - GFF1723 0.64 -0.2
580,811 - GFF1723 0.64 +0.4
580,861 + GFF1723 0.68 -0.4
580,861 + GFF1723 0.68 +0.9
580,862 - GFF1723 0.69 -0.4
580,862 - GFF1723 0.69 -0.4

Or see this region's nucleotide sequence