Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1665 and GFF1666 are separated by 3 nucleotides GFF1666 and GFF1667 are separated by 74 nucleotides
GFF1665 - Holliday junction DNA helicase RuvB, at 521,300 to 522,352
GFF1665
GFF1666 - Holliday junction DNA helicase RuvA, at 522,356 to 522,934
GFF1666
GFF1667 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 523,009 to 523,947
GFF1667
Position (kb) 521
522
523 Strain fitness (log2 ratio) -2
-1
0
1 at 520.343 kb on + strand at 520.344 kb on - strand at 520.463 kb on + strand at 520.463 kb on + strand at 520.463 kb on + strand at 520.464 kb on - strand at 520.592 kb on + strand at 520.592 kb on + strand at 520.593 kb on - strand at 520.593 kb on - strand at 520.727 kb on + strand at 520.727 kb on + strand at 520.727 kb on + strand at 520.727 kb on + strand at 520.728 kb on - strand at 520.728 kb on - strand at 520.728 kb on - strand at 520.728 kb on - strand at 521.067 kb on - strand at 521.356 kb on - strand at 522.754 kb on - strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.828 kb on + strand, within GFF1666 at 522.829 kb on - strand, within GFF1666 at 522.829 kb on - strand, within GFF1666 at 522.829 kb on - strand, within GFF1666 at 522.913 kb on + strand at 522.914 kb on - strand at 522.930 kb on - strand at 523.156 kb on + strand, within GFF1667 at 523.156 kb on + strand, within GFF1667 at 523.157 kb on - strand, within GFF1667
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 520,343 + +0.5 520,344 - -0.2 520,463 + +0.5 520,463 + -0.9 520,463 + -0.1 520,464 - +0.2 520,592 + +1.0 520,592 + -0.3 520,593 - -0.0 520,593 - +1.5 520,727 + +0.1 520,727 + -0.6 520,727 + +0.8 520,727 + +0.5 520,728 - -0.7 520,728 - +0.8 520,728 - -0.2 520,728 - -1.5 521,067 - -0.3 521,356 - -2.7 522,754 - GFF1666 0.69 +0.3 522,828 + GFF1666 0.82 -0.8 522,828 + GFF1666 0.82 -1.3 522,828 + GFF1666 0.82 -1.1 522,828 + GFF1666 0.82 -0.7 522,828 + GFF1666 0.82 -0.5 522,829 - GFF1666 0.82 +0.3 522,829 - GFF1666 0.82 -1.5 522,829 - GFF1666 0.82 -0.1 522,913 + -0.1 522,914 - -1.3 522,930 - -1.8 523,156 + GFF1667 0.16 -0.1 523,156 + GFF1667 0.16 -0.4 523,157 - GFF1667 0.16 -0.2
Or see this region's nucleotide sequence