Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1659

Experiment: Ying_sugar7 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1657 and GFF1658 overlap by 4 nucleotidesGFF1658 and GFF1659 are separated by 42 nucleotidesGFF1659 and GFF1660 are separated by 7 nucleotides GFF1657 - Transcriptional regulator, IclR family, at 509,912 to 510,784 GFF1657 GFF1658 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 510,781 to 511,710 GFF1658 GFF1659 - Probable lipoprotein transmembrane, at 511,753 to 512,457 GFF1659 GFF1660 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 512,465 to 514,837 GFF1660 Position (kb) 511 512 513Strain fitness (log2 ratio) -1 0 1 2at 510.853 kb on + strandat 510.853 kb on + strandat 510.853 kb on + strandat 510.854 kb on - strandat 510.854 kb on - strandat 510.854 kb on - strandat 510.854 kb on - strandat 510.913 kb on + strand, within GFF1658at 510.913 kb on + strand, within GFF1658at 510.913 kb on + strand, within GFF1658at 510.913 kb on + strand, within GFF1658at 510.913 kb on + strand, within GFF1658at 510.913 kb on + strand, within GFF1658at 510.914 kb on - strand, within GFF1658at 510.914 kb on - strand, within GFF1658at 510.914 kb on - strand, within GFF1658at 510.914 kb on - strand, within GFF1658at 511.030 kb on + strand, within GFF1658at 511.030 kb on + strand, within GFF1658at 511.031 kb on - strand, within GFF1658at 511.078 kb on + strand, within GFF1658at 511.078 kb on + strand, within GFF1658at 511.078 kb on + strand, within GFF1658at 511.078 kb on + strand, within GFF1658at 511.078 kb on + strand, within GFF1658at 511.078 kb on + strand, within GFF1658at 511.078 kb on + strand, within GFF1658at 511.079 kb on - strand, within GFF1658at 511.079 kb on - strand, within GFF1658at 511.079 kb on - strand, within GFF1658at 511.079 kb on - strand, within GFF1658at 511.079 kb on - strand, within GFF1658at 511.079 kb on - strand, within GFF1658at 511.079 kb on - strand, within GFF1658at 511.156 kb on + strand, within GFF1658at 511.156 kb on + strand, within GFF1658at 511.157 kb on - strand, within GFF1658at 511.248 kb on - strand, within GFF1658at 511.324 kb on + strand, within GFF1658at 511.324 kb on + strand, within GFF1658at 511.324 kb on + strand, within GFF1658at 511.324 kb on + strand, within GFF1658at 511.325 kb on - strand, within GFF1658at 511.325 kb on - strand, within GFF1658at 511.325 kb on - strand, within GFF1658at 511.325 kb on - strand, within GFF1658at 511.325 kb on - strand, within GFF1658at 511.688 kb on + strandat 511.688 kb on + strandat 511.688 kb on + strandat 511.689 kb on - strandat 511.837 kb on + strand, within GFF1659at 511.837 kb on + strand, within GFF1659at 511.837 kb on + strand, within GFF1659at 511.837 kb on + strand, within GFF1659at 511.838 kb on - strand, within GFF1659at 511.838 kb on - strand, within GFF1659at 511.838 kb on - strand, within GFF1659at 511.933 kb on + strand, within GFF1659at 511.933 kb on + strand, within GFF1659at 511.934 kb on - strand, within GFF1659at 512.125 kb on + strand, within GFF1659at 512.125 kb on + strand, within GFF1659at 512.126 kb on - strand, within GFF1659at 512.126 kb on - strand, within GFF1659at 512.126 kb on - strand, within GFF1659at 512.134 kb on + strand, within GFF1659at 512.146 kb on + strand, within GFF1659at 512.147 kb on - strand, within GFF1659at 512.200 kb on + strand, within GFF1659at 512.200 kb on + strand, within GFF1659at 512.201 kb on - strand, within GFF1659at 512.201 kb on - strand, within GFF1659at 512.242 kb on + strand, within GFF1659at 512.242 kb on + strand, within GFF1659at 512.243 kb on - strand, within GFF1659at 512.243 kb on - strand, within GFF1659at 512.263 kb on + strand, within GFF1659at 512.266 kb on + strand, within GFF1659at 512.267 kb on - strand, within GFF1659at 512.320 kb on + strand, within GFF1659at 512.321 kb on - strand, within GFF1659at 512.321 kb on - strand, within GFF1659at 512.767 kb on - strand, within GFF1660at 512.815 kb on - strand, within GFF1660at 512.815 kb on - strand, within GFF1660at 512.826 kb on + strand, within GFF1660at 512.826 kb on + strand, within GFF1660at 512.826 kb on + strand, within GFF1660at 512.827 kb on - strand, within GFF1660at 512.827 kb on - strand, within GFF1660at 512.827 kb on - strand, within GFF1660at 512.827 kb on - strand, within GFF1660at 512.827 kb on - strand, within GFF1660at 512.932 kb on - strand, within GFF1660at 512.932 kb on - strand, within GFF1660at 513.132 kb on + strand, within GFF1660

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2
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510,853 + +0.2
510,853 + -0.2
510,853 + +0.0
510,854 - +0.2
510,854 - -0.2
510,854 - -0.0
510,854 - +0.8
510,913 + GFF1658 0.14 +0.7
510,913 + GFF1658 0.14 +1.8
510,913 + GFF1658 0.14 +0.3
510,913 + GFF1658 0.14 +0.2
510,913 + GFF1658 0.14 -0.3
510,913 + GFF1658 0.14 +1.3
510,914 - GFF1658 0.14 +0.2
510,914 - GFF1658 0.14 -0.1
510,914 - GFF1658 0.14 -0.1
510,914 - GFF1658 0.14 +0.4
511,030 + GFF1658 0.27 +0.1
511,030 + GFF1658 0.27 +0.3
511,031 - GFF1658 0.27 +0.5
511,078 + GFF1658 0.32 +0.9
511,078 + GFF1658 0.32 -0.5
511,078 + GFF1658 0.32 -0.2
511,078 + GFF1658 0.32 -0.1
511,078 + GFF1658 0.32 -0.3
511,078 + GFF1658 0.32 -0.2
511,078 + GFF1658 0.32 +0.6
511,079 - GFF1658 0.32 +0.0
511,079 - GFF1658 0.32 +0.4
511,079 - GFF1658 0.32 +0.7
511,079 - GFF1658 0.32 +0.3
511,079 - GFF1658 0.32 -0.1
511,079 - GFF1658 0.32 +1.5
511,079 - GFF1658 0.32 +1.5
511,156 + GFF1658 0.40 +0.9
511,156 + GFF1658 0.40 -0.2
511,157 - GFF1658 0.40 -0.6
511,248 - GFF1658 0.50 +0.3
511,324 + GFF1658 0.58 -0.0
511,324 + GFF1658 0.58 -0.2
511,324 + GFF1658 0.58 +0.4
511,324 + GFF1658 0.58 -0.1
511,325 - GFF1658 0.58 -0.3
511,325 - GFF1658 0.58 -0.5
511,325 - GFF1658 0.58 +0.5
511,325 - GFF1658 0.58 -0.5
511,325 - GFF1658 0.58 +1.1
511,688 + +0.1
511,688 + -0.9
511,688 + +1.2
511,689 - +0.6
511,837 + GFF1659 0.12 +0.1
511,837 + GFF1659 0.12 +0.4
511,837 + GFF1659 0.12 +1.4
511,837 + GFF1659 0.12 +0.2
511,838 - GFF1659 0.12 +0.0
511,838 - GFF1659 0.12 +0.0
511,838 - GFF1659 0.12 +0.5
511,933 + GFF1659 0.26 +0.0
511,933 + GFF1659 0.26 -0.4
511,934 - GFF1659 0.26 -0.7
512,125 + GFF1659 0.53 -0.4
512,125 + GFF1659 0.53 +0.9
512,126 - GFF1659 0.53 -1.1
512,126 - GFF1659 0.53 -0.2
512,126 - GFF1659 0.53 -0.3
512,134 + GFF1659 0.54 -0.8
512,146 + GFF1659 0.56 +0.6
512,147 - GFF1659 0.56 -0.2
512,200 + GFF1659 0.63 -0.2
512,200 + GFF1659 0.63 +0.8
512,201 - GFF1659 0.64 -0.4
512,201 - GFF1659 0.64 -0.2
512,242 + GFF1659 0.69 -0.3
512,242 + GFF1659 0.69 -0.5
512,243 - GFF1659 0.70 -0.4
512,243 - GFF1659 0.70 +0.3
512,263 + GFF1659 0.72 -0.1
512,266 + GFF1659 0.73 +0.4
512,267 - GFF1659 0.73 -0.4
512,320 + GFF1659 0.80 -0.2
512,321 - GFF1659 0.81 -0.5
512,321 - GFF1659 0.81 +0.4
512,767 - GFF1660 0.13 +0.2
512,815 - GFF1660 0.15 +0.3
512,815 - GFF1660 0.15 -0.1
512,826 + GFF1660 0.15 +0.8
512,826 + GFF1660 0.15 -0.5
512,826 + GFF1660 0.15 +1.2
512,827 - GFF1660 0.15 +1.0
512,827 - GFF1660 0.15 -0.8
512,827 - GFF1660 0.15 +0.3
512,827 - GFF1660 0.15 -0.6
512,827 - GFF1660 0.15 -0.0
512,932 - GFF1660 0.20 +1.0
512,932 - GFF1660 0.20 +0.5
513,132 + GFF1660 0.28 +0.5

Or see this region's nucleotide sequence