Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1596

Experiment: Ying_sugar7 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 2
450,524	+		GFF1595	0.18	+0.2
450,524	+		GFF1595	0.18	-0.2
450,563	+		GFF1595	0.22	+1.0
450,563	+		GFF1595	0.22	-0.3
450,563	+		GFF1595	0.22	+0.7
450,563	+		GFF1595	0.22	+0.6
450,564	-		GFF1595	0.22	+0.0
450,564	-		GFF1595	0.22	+0.4
450,564	-		GFF1595	0.22	-0.4
450,564	-		GFF1595	0.22	-0.4
450,564	-		GFF1595	0.22	-1.2
450,851	+		GFF1595	0.51	+1.5
450,851	+		GFF1595	0.51	-0.5
450,960	-		GFF1595	0.62	-0.5
450,960	-		GFF1595	0.62	-0.1
450,960	-		GFF1595	0.62	+0.7
450,972	-		GFF1595	0.63	-0.1
451,073	+		GFF1595	0.74	+0.6
451,073	+		GFF1595	0.74	+0.3
451,073	+		GFF1595	0.74	-0.4
451,407	+				-0.1
451,407	+				+0.5
451,407	+				+0.0
451,407	+				-0.2
451,408	-				+0.1
451,408	-				+0.6
451,408	-				-0.3
451,467	-				+0.3
451,467	-				-2.3
451,610	-		GFF1596	0.44	-0.3
451,745	+		GFF1596	0.79	-0.3
451,745	+		GFF1596	0.79	-0.2
451,745	+		GFF1596	0.79	-1.6
451,787	+				+1.0
451,788	-				+0.6
451,788	-				+0.6
451,788	-				+0.4
451,788	-				+0.1