Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1504 and GFF1505 are separated by 8 nucleotides GFF1505 and GFF1506 are separated by 81 nucleotides GFF1506 and GFF1507 are separated by 65 nucleotides
GFF1504 - Cardiolipin synthetase (EC 2.7.8.-), at 354,849 to 356,234
GFF1504
GFF1505 - putative exported protein, at 356,243 to 356,683
GFF1505
GFF1506 - hypothetical protein, at 356,765 to 357,196
GFF1506
GFF1507 - Esterase/lipase, at 357,262 to 358,188
GFF1507
Position (kb) 356
357
358 Strain fitness (log2 ratio) -1
0
1
2 at 355.786 kb on - strand, within GFF1504 at 355.801 kb on - strand, within GFF1504 at 355.801 kb on - strand, within GFF1504 at 355.924 kb on - strand, within GFF1504 at 355.924 kb on - strand, within GFF1504 at 355.924 kb on - strand, within GFF1504 at 355.926 kb on + strand, within GFF1504 at 355.927 kb on - strand, within GFF1504 at 355.927 kb on - strand, within GFF1504 at 355.959 kb on + strand, within GFF1504 at 355.959 kb on + strand, within GFF1504 at 355.960 kb on - strand, within GFF1504 at 356.223 kb on + strand at 356.224 kb on - strand at 356.224 kb on - strand at 356.224 kb on - strand at 356.224 kb on - strand at 356.224 kb on - strand at 356.568 kb on + strand, within GFF1505 at 356.669 kb on + strand at 356.669 kb on + strand at 356.670 kb on - strand at 356.670 kb on - strand at 356.710 kb on + strand at 356.710 kb on + strand at 356.710 kb on + strand at 356.710 kb on + strand at 356.711 kb on - strand at 356.711 kb on - strand at 356.711 kb on - strand at 356.711 kb on - strand at 356.711 kb on - strand at 356.735 kb on + strand at 356.736 kb on - strand at 356.832 kb on + strand, within GFF1506 at 356.832 kb on + strand, within GFF1506 at 356.832 kb on + strand, within GFF1506 at 356.833 kb on - strand, within GFF1506 at 356.833 kb on - strand, within GFF1506 at 356.964 kb on + strand, within GFF1506 at 356.965 kb on - strand, within GFF1506 at 357.232 kb on + strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.232 kb on + strand at 357.233 kb on - strand at 357.233 kb on - strand at 357.363 kb on + strand, within GFF1507 at 357.463 kb on + strand, within GFF1507 at 357.464 kb on - strand, within GFF1507 at 357.464 kb on - strand, within GFF1507 at 357.500 kb on - strand, within GFF1507 at 357.818 kb on - strand, within GFF1507 at 357.853 kb on + strand, within GFF1507 at 357.853 kb on + strand, within GFF1507 at 357.916 kb on + strand, within GFF1507 at 357.916 kb on + strand, within GFF1507 at 357.916 kb on + strand, within GFF1507 at 357.917 kb on - strand, within GFF1507 at 358.045 kb on + strand, within GFF1507
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 355,786 - GFF1504 0.68 -0.5 355,801 - GFF1504 0.69 -0.5 355,801 - GFF1504 0.69 -0.1 355,924 - GFF1504 0.78 -0.0 355,924 - GFF1504 0.78 -1.0 355,924 - GFF1504 0.78 +1.2 355,926 + GFF1504 0.78 +0.6 355,927 - GFF1504 0.78 -0.5 355,927 - GFF1504 0.78 +0.3 355,959 + GFF1504 0.80 -0.8 355,959 + GFF1504 0.80 +0.2 355,960 - GFF1504 0.80 +0.2 356,223 + -0.5 356,224 - +0.8 356,224 - -0.3 356,224 - -0.1 356,224 - -1.0 356,224 - -0.1 356,568 + GFF1505 0.74 -1.1 356,669 + +0.2 356,669 + -1.0 356,670 - +0.4 356,670 - +0.0 356,710 + +0.2 356,710 + -1.6 356,710 + +0.2 356,710 + -0.1 356,711 - -0.2 356,711 - -0.1 356,711 - +0.3 356,711 - -0.0 356,711 - +0.0 356,735 + -0.1 356,736 - +0.0 356,832 + GFF1506 0.16 +0.4 356,832 + GFF1506 0.16 -0.7 356,832 + GFF1506 0.16 -0.0 356,833 - GFF1506 0.16 -0.1 356,833 - GFF1506 0.16 +0.1 356,964 + GFF1506 0.46 -0.9 356,965 - GFF1506 0.46 -0.7 357,232 + +0.8 357,232 + +0.2 357,232 + -0.0 357,232 + -1.1 357,232 + -0.3 357,233 - +0.0 357,233 - +0.2 357,363 + GFF1507 0.11 -0.1 357,463 + GFF1507 0.22 +1.8 357,464 - GFF1507 0.22 -0.0 357,464 - GFF1507 0.22 -0.7 357,500 - GFF1507 0.26 -0.5 357,818 - GFF1507 0.60 +0.5 357,853 + GFF1507 0.64 +0.6 357,853 + GFF1507 0.64 +0.2 357,916 + GFF1507 0.71 +0.3 357,916 + GFF1507 0.71 +0.3 357,916 + GFF1507 0.71 -0.5 357,917 - GFF1507 0.71 +0.1 358,045 + GFF1507 0.84 -0.1
Or see this region's nucleotide sequence