Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1474 and GFF1475 are separated by 106 nucleotides GFF1475 and GFF1476 are separated by 132 nucleotides GFF1476 and GFF1477 are separated by 80 nucleotides GFF1477 and GFF1478 overlap by 14 nucleotides
GFF1474 - COG0840: Methyl-accepting chemotaxis protein, at 324,439 to 324,867
GFF1474
GFF1475 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 324,974 to 325,291
GFF1475
GFF1476 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 325,424 to 327,556
GFF1476
GFF1477 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 327,637 to 328,497
GFF1477
GFF1478 - Chemotaxis protein CheD, at 328,484 to 329,140
GFF1478
Position (kb) 325
326
327
328 Strain fitness (log2 ratio) -2
-1
0
1 at 324.431 kb on + strand at 324.432 kb on - strand at 324.904 kb on + strand at 324.905 kb on - strand at 324.905 kb on - strand at 324.924 kb on - strand at 325.005 kb on - strand at 325.297 kb on + strand at 325.484 kb on + strand at 325.485 kb on - strand at 325.485 kb on - strand at 325.624 kb on + strand at 325.625 kb on - strand at 327.185 kb on + strand, within GFF1476 at 327.185 kb on + strand, within GFF1476 at 327.185 kb on + strand, within GFF1476 at 327.185 kb on + strand, within GFF1476 at 327.186 kb on - strand, within GFF1476 at 327.186 kb on - strand, within GFF1476 at 327.288 kb on - strand, within GFF1476 at 327.288 kb on - strand, within GFF1476 at 327.288 kb on - strand, within GFF1476 at 327.288 kb on - strand, within GFF1476 at 327.324 kb on + strand, within GFF1476 at 327.324 kb on + strand, within GFF1476 at 327.455 kb on + strand at 327.456 kb on - strand at 327.456 kb on - strand at 327.800 kb on - strand, within GFF1477 at 327.800 kb on - strand, within GFF1477 at 327.854 kb on - strand, within GFF1477 at 328.039 kb on + strand, within GFF1477 at 328.147 kb on + strand, within GFF1477 at 328.148 kb on - strand, within GFF1477 at 328.148 kb on - strand, within GFF1477 at 328.148 kb on - strand, within GFF1477 at 328.345 kb on + strand, within GFF1477 at 328.346 kb on - strand, within GFF1477 at 328.346 kb on - strand, within GFF1477 at 328.483 kb on + strand at 328.483 kb on + strand at 328.484 kb on - strand at 328.484 kb on - strand at 328.484 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 324,431 + -0.0 324,432 - -0.7 324,904 + +0.6 324,905 - -0.2 324,905 - -0.6 324,924 - -2.1 325,005 - -0.7 325,297 + -0.7 325,484 + -0.4 325,485 - +0.3 325,485 - +0.5 325,624 + -0.4 325,625 - +1.4 327,185 + GFF1476 0.83 +0.4 327,185 + GFF1476 0.83 +1.5 327,185 + GFF1476 0.83 +0.3 327,185 + GFF1476 0.83 +0.2 327,186 - GFF1476 0.83 +0.2 327,186 - GFF1476 0.83 +0.7 327,288 - GFF1476 0.87 -1.2 327,288 - GFF1476 0.87 +0.4 327,288 - GFF1476 0.87 -0.5 327,288 - GFF1476 0.87 -0.4 327,324 + GFF1476 0.89 -1.5 327,324 + GFF1476 0.89 -0.2 327,455 + +0.3 327,456 - -0.2 327,456 - -0.0 327,800 - GFF1477 0.19 -0.6 327,800 - GFF1477 0.19 +0.0 327,854 - GFF1477 0.25 -0.0 328,039 + GFF1477 0.47 +1.3 328,147 + GFF1477 0.59 -0.2 328,148 - GFF1477 0.59 -0.4 328,148 - GFF1477 0.59 -1.3 328,148 - GFF1477 0.59 -0.7 328,345 + GFF1477 0.82 -0.9 328,346 - GFF1477 0.82 -0.1 328,346 - GFF1477 0.82 +0.5 328,483 + -0.2 328,483 + -1.2 328,484 - +0.5 328,484 - -1.5 328,484 - -0.3
Or see this region's nucleotide sequence