Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1451 and GFF1452 overlap by 4 nucleotides GFF1452 and GFF1453 are separated by 6 nucleotides GFF1453 and GFF1454 overlap by 8 nucleotides GFF1454 and GFF1455 overlap by 4 nucleotides GFF1455 and GFF1456 are separated by 28 nucleotides
GFF1451 - Flagellar motor switch protein FliG, at 306,676 to 307,674
GFF1451
GFF1452 - hypothetical protein, at 307,671 to 307,787
GFF1452
GFF1453 - Flagellar assembly protein FliH, at 307,794 to 308,498
GFF1453
GFF1454 - Flagellum-specific ATP synthase FliI, at 308,491 to 309,969
GFF1454
GFF1455 - Flagellar protein FliJ, at 309,966 to 310,433
GFF1455
GFF1456 - Flagellar hook-length control protein FliK, at 310,462 to 311,733
GFF1456
Position (kb) 308
309
310 Strain fitness (log2 ratio) -1
0
1 at 307.671 kb on - strand at 307.785 kb on + strand at 308.132 kb on + strand, within GFF1453 at 308.725 kb on + strand, within GFF1454 at 309.286 kb on + strand, within GFF1454 at 309.287 kb on - strand, within GFF1454 at 309.508 kb on + strand, within GFF1454 at 309.508 kb on + strand, within GFF1454 at 309.508 kb on + strand, within GFF1454 at 309.805 kb on + strand, within GFF1454 at 309.950 kb on - strand at 310.098 kb on + strand, within GFF1455
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 307,671 - -0.5 307,785 + -0.2 308,132 + GFF1453 0.48 +0.0 308,725 + GFF1454 0.16 -0.2 309,286 + GFF1454 0.54 -0.3 309,287 - GFF1454 0.54 +1.0 309,508 + GFF1454 0.69 +1.5 309,508 + GFF1454 0.69 -0.1 309,508 + GFF1454 0.69 -1.1 309,805 + GFF1454 0.89 +0.2 309,950 - -0.3 310,098 + GFF1455 0.28 -0.4
Or see this region's nucleotide sequence