Experiment: Ying_sugar7 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1180 and GFF1181 are separated by 9 nucleotides GFF1181 and GFF1182 are separated by 73 nucleotides GFF1182 and GFF1183 are separated by 120 nucleotides
GFF1180 - membrane protein, at 38,059 to 38,643
GFF1180
GFF1181 - FIG006045: Sigma factor, ECF subfamily, at 38,653 to 39,210
GFF1181
GFF1182 - putative transmembrane sensor, at 39,284 to 40,405
GFF1182
GFF1183 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 40,526 to 43,018
GFF1183
Position (kb) 39
40
41 Strain fitness (log2 ratio) -1
0
1 at 38.392 kb on + strand, within GFF1180 at 38.392 kb on + strand, within GFF1180 at 38.393 kb on - strand, within GFF1180 at 38.393 kb on - strand, within GFF1180 at 38.393 kb on - strand, within GFF1180 at 38.416 kb on + strand, within GFF1180 at 38.416 kb on + strand, within GFF1180 at 38.416 kb on + strand, within GFF1180 at 38.584 kb on + strand, within GFF1180 at 38.584 kb on + strand, within GFF1180 at 38.585 kb on - strand at 38.585 kb on - strand at 38.716 kb on + strand, within GFF1181 at 38.716 kb on + strand, within GFF1181 at 38.717 kb on - strand, within GFF1181 at 38.717 kb on - strand, within GFF1181 at 38.974 kb on + strand, within GFF1181 at 38.974 kb on + strand, within GFF1181 at 38.974 kb on + strand, within GFF1181 at 38.974 kb on + strand, within GFF1181 at 38.975 kb on - strand, within GFF1181 at 38.975 kb on - strand, within GFF1181 at 39.758 kb on + strand, within GFF1182 at 39.986 kb on + strand, within GFF1182 at 39.986 kb on + strand, within GFF1182 at 39.986 kb on + strand, within GFF1182 at 39.987 kb on - strand, within GFF1182 at 40.253 kb on + strand, within GFF1182 at 40.326 kb on + strand at 41.023 kb on - strand, within GFF1183 at 41.118 kb on + strand, within GFF1183 at 41.118 kb on + strand, within GFF1183 at 41.118 kb on + strand, within GFF1183 at 41.162 kb on + strand, within GFF1183 at 41.163 kb on - strand, within GFF1183 at 41.186 kb on + strand, within GFF1183 at 41.186 kb on + strand, within GFF1183 at 41.187 kb on - strand, within GFF1183 at 41.187 kb on - strand, within GFF1183 at 41.387 kb on + strand, within GFF1183 at 41.388 kb on + strand, within GFF1183 at 41.388 kb on - strand, within GFF1183 at 41.388 kb on - strand, within GFF1183 at 41.388 kb on - strand, within GFF1183 at 41.388 kb on - strand, within GFF1183 at 41.388 kb on - strand, within GFF1183
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 2 remove 38,392 + GFF1180 0.57 +0.3 38,392 + GFF1180 0.57 -0.4 38,393 - GFF1180 0.57 -0.6 38,393 - GFF1180 0.57 -0.6 38,393 - GFF1180 0.57 -0.4 38,416 + GFF1180 0.61 -0.1 38,416 + GFF1180 0.61 +0.2 38,416 + GFF1180 0.61 -0.1 38,584 + GFF1180 0.90 -0.5 38,584 + GFF1180 0.90 -0.5 38,585 - -0.3 38,585 - +0.0 38,716 + GFF1181 0.11 +1.2 38,716 + GFF1181 0.11 -0.3 38,717 - GFF1181 0.11 -0.3 38,717 - GFF1181 0.11 -0.5 38,974 + GFF1181 0.58 -0.1 38,974 + GFF1181 0.58 -0.1 38,974 + GFF1181 0.58 -0.9 38,974 + GFF1181 0.58 -0.2 38,975 - GFF1181 0.58 -0.3 38,975 - GFF1181 0.58 -0.3 39,758 + GFF1182 0.42 +0.5 39,986 + GFF1182 0.63 -0.4 39,986 + GFF1182 0.63 -0.0 39,986 + GFF1182 0.63 +0.5 39,987 - GFF1182 0.63 +0.4 40,253 + GFF1182 0.86 +0.8 40,326 + +0.0 41,023 - GFF1183 0.20 +1.2 41,118 + GFF1183 0.24 -0.9 41,118 + GFF1183 0.24 +0.6 41,118 + GFF1183 0.24 -0.7 41,162 + GFF1183 0.26 +0.5 41,163 - GFF1183 0.26 +0.6 41,186 + GFF1183 0.26 +0.4 41,186 + GFF1183 0.26 -0.3 41,187 - GFF1183 0.27 +0.5 41,187 - GFF1183 0.27 +0.0 41,387 + GFF1183 0.35 +1.1 41,388 + GFF1183 0.35 -0.0 41,388 - GFF1183 0.35 -0.4 41,388 - GFF1183 0.35 +0.5 41,388 - GFF1183 0.35 -0.5 41,388 - GFF1183 0.35 -0.2 41,388 - GFF1183 0.35 -0.5
Or see this region's nucleotide sequence